miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26344 3' -62.1 NC_005345.2 + 48041 0.67 0.245427
Target:  5'- gCGGCgcacacGGGCGGCUCGGCaguccGGcCCGCGg -3'
miRNA:   3'- -GCCG------UCCGCCGGGUUGaa---CC-GGCGUa -5'
26344 3' -62.1 NC_005345.2 + 47858 0.66 0.296668
Target:  5'- aGGUGGGCaugGGCCCGGCgacggugacgucGGCCGgCGUg -3'
miRNA:   3'- gCCGUCCG---CCGGGUUGaa----------CCGGC-GUA- -5'
26344 3' -62.1 NC_005345.2 + 46880 0.68 0.232626
Target:  5'- uCGGCGuccgagcgugcuuGGCGGCgCAGCccGGUCGCGa -3'
miRNA:   3'- -GCCGU-------------CCGCCGgGUUGaaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 44758 0.75 0.072471
Target:  5'- cCGGCGGG-GGCCCGGC--GGCCGUGUc -3'
miRNA:   3'- -GCCGUCCgCCGGGUUGaaCCGGCGUA- -5'
26344 3' -62.1 NC_005345.2 + 44016 0.67 0.264722
Target:  5'- uCGGCAcGGcCGGCCCGGCgcuacacGCCGUc- -3'
miRNA:   3'- -GCCGU-CC-GCCGGGUUGaac----CGGCGua -5'
26344 3' -62.1 NC_005345.2 + 43978 0.68 0.215877
Target:  5'- cCGGC-GGCucGCCCGACUcgucGGCCGCc- -3'
miRNA:   3'- -GCCGuCCGc-CGGGUUGAa---CCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 43123 0.7 0.161486
Target:  5'- cCGGaCcGGUGGCCCAACggccGGCCGgAg -3'
miRNA:   3'- -GCC-GuCCGCCGGGUUGaa--CCGGCgUa -5'
26344 3' -62.1 NC_005345.2 + 42872 0.77 0.044664
Target:  5'- aCGGCAcGaGCGGCgCCGGgUUGGCCGCGg -3'
miRNA:   3'- -GCCGU-C-CGCCG-GGUUgAACCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 41278 0.71 0.130021
Target:  5'- cCGGCGGGUGGgUguGCUggGGCCGCc- -3'
miRNA:   3'- -GCCGUCCGCCgGguUGAa-CCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 40830 0.67 0.258157
Target:  5'- gCGGCcGGCGGCCgAAC--GGuCCGCc- -3'
miRNA:   3'- -GCCGuCCGCCGGgUUGaaCC-GGCGua -5'
26344 3' -62.1 NC_005345.2 + 39834 0.66 0.299583
Target:  5'- uCGGCAucGCgGGCUCGGCc-GGCCGCAc -3'
miRNA:   3'- -GCCGUc-CG-CCGGGUUGaaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 39239 0.68 0.215877
Target:  5'- uGGCGGGuCGGCCCGGacgGGaagCGCAc -3'
miRNA:   3'- gCCGUCC-GCCGGGUUgaaCCg--GCGUa -5'
26344 3' -62.1 NC_005345.2 + 38671 0.66 0.322152
Target:  5'- cCGGC-GGUGGCCgAGgUaaucccGGCCGCGa -3'
miRNA:   3'- -GCCGuCCGCCGGgUUgAa-----CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 37868 0.68 0.233222
Target:  5'- cCGGCgAGGCucaGGCCCGGac-GGUCGCGg -3'
miRNA:   3'- -GCCG-UCCG---CCGGGUUgaaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 36945 0.68 0.215877
Target:  5'- aGGC-GGCGGCCgGACagcggcagacGGCCGCu- -3'
miRNA:   3'- gCCGuCCGCCGGgUUGaa--------CCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 36835 0.69 0.189428
Target:  5'- cCGGCGGuGCaGGCCgGACccUGGCgGCAc -3'
miRNA:   3'- -GCCGUC-CG-CCGGgUUGa-ACCGgCGUa -5'
26344 3' -62.1 NC_005345.2 + 36209 0.67 0.251726
Target:  5'- uCGGC-GGCcccugaGGaCCCGccgaagagcgACUUGGCCGCGUc -3'
miRNA:   3'- -GCCGuCCG------CC-GGGU----------UGAACCGGCGUA- -5'
26344 3' -62.1 NC_005345.2 + 33422 0.69 0.179671
Target:  5'- cCGGUguGGGCGGCacgCCGGCUacGCCGCGa -3'
miRNA:   3'- -GCCG--UCCGCCG---GGUUGAacCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 33041 0.66 0.314491
Target:  5'- uCGcGCAGGuCGGCCuCGACUgccucGCCGUg- -3'
miRNA:   3'- -GC-CGUCC-GCCGG-GUUGAac---CGGCGua -5'
26344 3' -62.1 NC_005345.2 + 32607 0.67 0.264722
Target:  5'- aGaCGGGCGGCCCGgacccGCgcagaucgGGCCGCc- -3'
miRNA:   3'- gCcGUCCGCCGGGU-----UGaa------CCGGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.