miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26344 3' -62.1 NC_005345.2 + 32518 0.81 0.021708
Target:  5'- cCGGCGGGCGGCCCGAuCUgcgcggguccgGGCCGCc- -3'
miRNA:   3'- -GCCGUCCGCCGGGUU-GAa----------CCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 32069 0.67 0.278256
Target:  5'- uGGUcgGGGCGGUcgugCCGACgggGGCgGCGUa -3'
miRNA:   3'- gCCG--UCCGCCG----GGUUGaa-CCGgCGUA- -5'
26344 3' -62.1 NC_005345.2 + 31488 0.66 0.325256
Target:  5'- gCGGaucGGCGGCCCcgcgaacacggucguGACcgaccGGCCGCGUc -3'
miRNA:   3'- -GCCgu-CCGCCGGG---------------UUGaa---CCGGCGUA- -5'
26344 3' -62.1 NC_005345.2 + 31192 0.72 0.12309
Target:  5'- cCGGCAGGCGGCCgAGCcggacGCCGgAc -3'
miRNA:   3'- -GCCGUCCGCCGGgUUGaac--CGGCgUa -5'
26344 3' -62.1 NC_005345.2 + 30691 0.66 0.314491
Target:  5'- uCGGCguccgGGGCGGUCUGAUcgggcGGCUGCAg -3'
miRNA:   3'- -GCCG-----UCCGCCGGGUUGaa---CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 28411 0.66 0.285228
Target:  5'- gCGGCAGGCagGGCggaucggucgCCGAg--GGCCGCGa -3'
miRNA:   3'- -GCCGUCCG--CCG----------GGUUgaaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 25538 0.67 0.278256
Target:  5'- gCGGCAGGgGcaGCUCGACgagUGGUgGCGc -3'
miRNA:   3'- -GCCGUCCgC--CGGGUUGa--ACCGgCGUa -5'
26344 3' -62.1 NC_005345.2 + 24468 0.66 0.289477
Target:  5'- uCGGCGucucgaugaugcuGCcGCCgAGCUUGGCCGCGUu -3'
miRNA:   3'- -GCCGUc------------CGcCGGgUUGAACCGGCGUA- -5'
26344 3' -62.1 NC_005345.2 + 23654 0.69 0.189428
Target:  5'- aGGCGGaCGGCgCCGACcagGGUCGCGg -3'
miRNA:   3'- gCCGUCcGCCG-GGUUGaa-CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 19099 0.68 0.233222
Target:  5'- aGGCGGagcaGCGGCCCGAg--GGCgGCGc -3'
miRNA:   3'- gCCGUC----CGCCGGGUUgaaCCGgCGUa -5'
26344 3' -62.1 NC_005345.2 + 19014 0.67 0.278256
Target:  5'- aCGGguGGCGcgccGCCCucg--GGCCGCu- -3'
miRNA:   3'- -GCCguCCGC----CGGGuugaaCCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 18851 0.68 0.23926
Target:  5'- gGGCAGGCGaGCagguGCg-GGCCGCGa -3'
miRNA:   3'- gCCGUCCGC-CGggu-UGaaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 18195 0.66 0.285228
Target:  5'- uCGGCgAGGCGcGCgCCGAgUgggGcGCCGCGUu -3'
miRNA:   3'- -GCCG-UCCGC-CG-GGUUgAa--C-CGGCGUA- -5'
26344 3' -62.1 NC_005345.2 + 16217 0.66 0.314491
Target:  5'- gGGguGGCGGgggcgucgacgaUCgGGCUcGGCCGCGg -3'
miRNA:   3'- gCCguCCGCC------------GGgUUGAaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 15785 0.67 0.258157
Target:  5'- uGGCGGGCGGCCC-GCaaGGUgugucaccaccUGCGg -3'
miRNA:   3'- gCCGUCCGCCGGGuUGaaCCG-----------GCGUa -5'
26344 3' -62.1 NC_005345.2 + 15066 0.66 0.306968
Target:  5'- gCGGC-GGCGGCCCcgaggagUGGCC-CGg -3'
miRNA:   3'- -GCCGuCCGCCGGGuuga---ACCGGcGUa -5'
26344 3' -62.1 NC_005345.2 + 14924 0.68 0.221532
Target:  5'- gCGGCGcGGCGGCUgCAGCgggcGGCgGCGa -3'
miRNA:   3'- -GCCGU-CCGCCGG-GUUGaa--CCGgCGUa -5'
26344 3' -62.1 NC_005345.2 + 14815 0.69 0.192952
Target:  5'- gCGGCGGGCGcggguguggucgacGCCCGagcaGCUUgccgGGCUGCAg -3'
miRNA:   3'- -GCCGUCCGC--------------CGGGU----UGAA----CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 14667 0.66 0.292337
Target:  5'- cCGGcCGGGCGGCgucgCCGAUgccgGGCCGg-- -3'
miRNA:   3'- -GCC-GUCCGCCG----GGUUGaa--CCGGCgua -5'
26344 3' -62.1 NC_005345.2 + 13938 0.67 0.271421
Target:  5'- cCGGCGGaGCGaGCUguACUUGuCCGCGa -3'
miRNA:   3'- -GCCGUC-CGC-CGGguUGAACcGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.