miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26344 3' -62.1 NC_005345.2 + 13376 0.67 0.258157
Target:  5'- gCGGCGGGUGGCUCggUUcgGGCgGgGg -3'
miRNA:   3'- -GCCGUCCGCCGGGuuGAa-CCGgCgUa -5'
26344 3' -62.1 NC_005345.2 + 12857 0.66 0.322152
Target:  5'- cCGGUgacgucguggGGGUGGCUCGccGCcgggUGGCCGCu- -3'
miRNA:   3'- -GCCG----------UCCGCCGGGU--UGa---ACCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 12559 0.68 0.225566
Target:  5'- uGGCAGGUGGCaUCGugacuguccucuucGCUguugcGGCCGCGa -3'
miRNA:   3'- gCCGUCCGCCG-GGU--------------UGAa----CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 11782 0.73 0.104304
Target:  5'- gCGGC-GGCGGCCCG-CUggucGGCCGUc- -3'
miRNA:   3'- -GCCGuCCGCCGGGUuGAa---CCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 11491 0.72 0.12309
Target:  5'- cCGcGCAGGCGGCCCGcaccgacgccggACUgcaGCCGCu- -3'
miRNA:   3'- -GC-CGUCCGCCGGGU------------UGAac-CGGCGua -5'
26344 3' -62.1 NC_005345.2 + 11444 0.74 0.08824
Target:  5'- -cGCAGGCGGCCgCGACcggGGCUGCu- -3'
miRNA:   3'- gcCGUCCGCCGG-GUUGaa-CCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 10798 0.71 0.144976
Target:  5'- gCGGCAGGCGGaCCGGCUcgauUGGUgccUGCGg -3'
miRNA:   3'- -GCCGUCCGCCgGGUUGA----ACCG---GCGUa -5'
26344 3' -62.1 NC_005345.2 + 10717 0.68 0.23926
Target:  5'- gCGGCAGcucguCGGCCgGA--UGGCCGCGc -3'
miRNA:   3'- -GCCGUCc----GCCGGgUUgaACCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 10039 0.67 0.264722
Target:  5'- aGGCGGacccGCaGCCCGAacccgGGCCGCGg -3'
miRNA:   3'- gCCGUC----CGcCGGGUUgaa--CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 9774 0.7 0.161486
Target:  5'- gCGGCucacgcGGCGGCCCG-CUgaucGGCCuGCAg -3'
miRNA:   3'- -GCCGu-----CCGCCGGGUuGAa---CCGG-CGUa -5'
26344 3' -62.1 NC_005345.2 + 9146 0.68 0.23926
Target:  5'- cCGGCGacGGCGGCCCGGauaaaGUCGCGg -3'
miRNA:   3'- -GCCGU--CCGCCGGGUUgaac-CGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 8684 0.77 0.051094
Target:  5'- gCGGCgguggccgugacguGGGCGGCCCGGCUgUGGCCGa-- -3'
miRNA:   3'- -GCCG--------------UCCGCCGGGUUGA-ACCGGCgua -5'
26344 3' -62.1 NC_005345.2 + 8591 0.66 0.329953
Target:  5'- aCGGUcgAGGCGGCCCGuccACUgccagUGGaCGCc- -3'
miRNA:   3'- -GCCG--UCCGCCGGGU---UGA-----ACCgGCGua -5'
26344 3' -62.1 NC_005345.2 + 8079 0.69 0.19448
Target:  5'- cCGaGCAGGCGGCCg-----GGCUGCAa -3'
miRNA:   3'- -GC-CGUCCGCCGGguugaaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 7360 0.66 0.285228
Target:  5'- gCGGUGGcGCaGCCgGGCgggggUGGCCGCu- -3'
miRNA:   3'- -GCCGUC-CGcCGGgUUGa----ACCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 7045 0.69 0.19448
Target:  5'- cCGGCgaucgAGGCGGCCCGGCc-GGacuaCGCGg -3'
miRNA:   3'- -GCCG-----UCCGCCGGGUUGaaCCg---GCGUa -5'
26344 3' -62.1 NC_005345.2 + 6831 0.66 0.329953
Target:  5'- uGGCGGGCGGgaUCGACaUGGUccuCGCGg -3'
miRNA:   3'- gCCGUCCGCCg-GGUUGaACCG---GCGUa -5'
26344 3' -62.1 NC_005345.2 + 6486 0.66 0.299583
Target:  5'- aCGGC-GGCGaGCCCGagGCguggacGCCGCAg -3'
miRNA:   3'- -GCCGuCCGC-CGGGU--UGaac---CGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 6340 1.05 0.000321
Target:  5'- gCGGCAGGCGGCCCAACUUGGCCGCAUc -3'
miRNA:   3'- -GCCGUCCGCCGGGUUGAACCGGCGUA- -5'
26344 3' -62.1 NC_005345.2 + 6063 0.66 0.292337
Target:  5'- aCGGCGGGCu-CCCGAg-UGGCUGCu- -3'
miRNA:   3'- -GCCGUCCGccGGGUUgaACCGGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.