miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26344 3' -62.1 NC_005345.2 + 6340 1.05 0.000321
Target:  5'- gCGGCAGGCGGCCCAACUUGGCCGCAUc -3'
miRNA:   3'- -GCCGUCCGCCGGGUUGAACCGGCGUA- -5'
26344 3' -62.1 NC_005345.2 + 14924 0.68 0.221532
Target:  5'- gCGGCGcGGCGGCUgCAGCgggcGGCgGCGa -3'
miRNA:   3'- -GCCGU-CCGCCGG-GUUGaa--CCGgCGUa -5'
26344 3' -62.1 NC_005345.2 + 37868 0.68 0.233222
Target:  5'- cCGGCgAGGCucaGGCCCGGac-GGUCGCGg -3'
miRNA:   3'- -GCCG-UCCG---CCGGGUUgaaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 6831 0.66 0.329953
Target:  5'- uGGCGGGCGGgaUCGACaUGGUccuCGCGg -3'
miRNA:   3'- gCCGUCCGCCg-GGUUGaACCG---GCGUa -5'
26344 3' -62.1 NC_005345.2 + 11491 0.72 0.12309
Target:  5'- cCGcGCAGGCGGCCCGcaccgacgccggACUgcaGCCGCu- -3'
miRNA:   3'- -GC-CGUCCGCCGGGU------------UGAac-CGGCGua -5'
26344 3' -62.1 NC_005345.2 + 31192 0.72 0.12309
Target:  5'- cCGGCAGGCGGCCgAGCcggacGCCGgAc -3'
miRNA:   3'- -GCCGUCCGCCGGgUUGaac--CGGCgUa -5'
26344 3' -62.1 NC_005345.2 + 10798 0.71 0.144976
Target:  5'- gCGGCAGGCGGaCCGGCUcgauUGGUgccUGCGg -3'
miRNA:   3'- -GCCGUCCGCCgGGUUGA----ACCG---GCGUa -5'
26344 3' -62.1 NC_005345.2 + 43123 0.7 0.161486
Target:  5'- cCGGaCcGGUGGCCCAACggccGGCCGgAg -3'
miRNA:   3'- -GCC-GuCCGCCGGGUUGaa--CCGGCgUa -5'
26344 3' -62.1 NC_005345.2 + 14815 0.69 0.192952
Target:  5'- gCGGCGGGCGcggguguggucgacGCCCGagcaGCUUgccgGGCUGCAg -3'
miRNA:   3'- -GCCGUCCGC--------------CGGGU----UGAA----CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 43978 0.68 0.215877
Target:  5'- cCGGC-GGCucGCCCGACUcgucGGCCGCc- -3'
miRNA:   3'- -GCCGuCCGc-CGGGUUGAa---CCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 7045 0.69 0.19448
Target:  5'- cCGGCgaucgAGGCGGCCCGGCc-GGacuaCGCGg -3'
miRNA:   3'- -GCCG-----UCCGCCGGGUUGaaCCg---GCGUa -5'
26344 3' -62.1 NC_005345.2 + 36835 0.69 0.189428
Target:  5'- cCGGCGGuGCaGGCCgGACccUGGCgGCAc -3'
miRNA:   3'- -GCCGUC-CG-CCGGgUUGa-ACCGgCGUa -5'
26344 3' -62.1 NC_005345.2 + 32518 0.81 0.021708
Target:  5'- cCGGCGGGCGGCCCGAuCUgcgcggguccgGGCCGCc- -3'
miRNA:   3'- -GCCGUCCGCCGGGUU-GAa----------CCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 36945 0.68 0.215877
Target:  5'- aGGC-GGCGGCCgGACagcggcagacGGCCGCu- -3'
miRNA:   3'- gCCGuCCGCCGGgUUGaa--------CCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 8684 0.77 0.051094
Target:  5'- gCGGCgguggccgugacguGGGCGGCCCGGCUgUGGCCGa-- -3'
miRNA:   3'- -GCCG--------------UCCGCCGGGUUGA-ACCGGCgua -5'
26344 3' -62.1 NC_005345.2 + 23654 0.69 0.189428
Target:  5'- aGGCGGaCGGCgCCGACcagGGUCGCGg -3'
miRNA:   3'- gCCGUCcGCCG-GGUUGaa-CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 39239 0.68 0.215877
Target:  5'- uGGCGGGuCGGCCCGGacgGGaagCGCAc -3'
miRNA:   3'- gCCGUCC-GCCGGGUUgaaCCg--GCGUa -5'
26344 3' -62.1 NC_005345.2 + 12559 0.68 0.225566
Target:  5'- uGGCAGGUGGCaUCGugacuguccucuucGCUguugcGGCCGCGa -3'
miRNA:   3'- gCCGUCCGCCG-GGU--------------UGAa----CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 2044 0.76 0.061142
Target:  5'- gGGCccGGcGCGGCCCGGCg-GGCCGCGg -3'
miRNA:   3'- gCCG--UC-CGCCGGGUUGaaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 41278 0.71 0.130021
Target:  5'- cCGGCGGGUGGgUguGCUggGGCCGCc- -3'
miRNA:   3'- -GCCGUCCGCCgGguUGAa-CCGGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.