Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26344 | 3' | -62.1 | NC_005345.2 | + | 4199 | 0.67 | 0.278256 |
Target: 5'- cCGuGCAGGCGGCgCGGCagauGCUGCGg -3' miRNA: 3'- -GC-CGUCCGCCGgGUUGaac-CGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 37868 | 0.68 | 0.233222 |
Target: 5'- cCGGCgAGGCucaGGCCCGGac-GGUCGCGg -3' miRNA: 3'- -GCCG-UCCG---CCGGGUUgaaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 43978 | 0.68 | 0.215877 |
Target: 5'- cCGGC-GGCucGCCCGACUcgucGGCCGCc- -3' miRNA: 3'- -GCCGuCCGc-CGGGUUGAa---CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 31488 | 0.66 | 0.325256 |
Target: 5'- gCGGaucGGCGGCCCcgcgaacacggucguGACcgaccGGCCGCGUc -3' miRNA: 3'- -GCCgu-CCGCCGGG---------------UUGaa---CCGGCGUA- -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 6063 | 0.66 | 0.292337 |
Target: 5'- aCGGCGGGCu-CCCGAg-UGGCUGCu- -3' miRNA: 3'- -GCCGUCCGccGGGUUgaACCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 3075 | 0.67 | 0.251726 |
Target: 5'- aGGCcccGGCGGCCCc----GGCCGCc- -3' miRNA: 3'- gCCGu--CCGCCGGGuugaaCCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 39239 | 0.68 | 0.215877 |
Target: 5'- uGGCGGGuCGGCCCGGacgGGaagCGCAc -3' miRNA: 3'- gCCGUCC-GCCGGGUUgaaCCg--GCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 28411 | 0.66 | 0.285228 |
Target: 5'- gCGGCAGGCagGGCggaucggucgCCGAg--GGCCGCGa -3' miRNA: 3'- -GCCGUCCG--CCG----------GGUUgaaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 36945 | 0.68 | 0.215877 |
Target: 5'- aGGC-GGCGGCCgGACagcggcagacGGCCGCu- -3' miRNA: 3'- gCCGuCCGCCGGgUUGaa--------CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 4173 | 0.67 | 0.271421 |
Target: 5'- gCGGCAGGC-GCUC-ACggGGCgGCAg -3' miRNA: 3'- -GCCGUCCGcCGGGuUGaaCCGgCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 19014 | 0.67 | 0.278256 |
Target: 5'- aCGGguGGCGcgccGCCCucg--GGCCGCu- -3' miRNA: 3'- -GCCguCCGC----CGGGuugaaCCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 14667 | 0.66 | 0.292337 |
Target: 5'- cCGGcCGGGCGGCgucgCCGAUgccgGGCCGg-- -3' miRNA: 3'- -GCC-GUCCGCCG----GGUUGaa--CCGGCgua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 18851 | 0.68 | 0.23926 |
Target: 5'- gGGCAGGCGaGCagguGCg-GGCCGCGa -3' miRNA: 3'- gCCGUCCGC-CGggu-UGaaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 10717 | 0.68 | 0.23926 |
Target: 5'- gCGGCAGcucguCGGCCgGA--UGGCCGCGc -3' miRNA: 3'- -GCCGUCc----GCCGGgUUgaACCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 12559 | 0.68 | 0.225566 |
Target: 5'- uGGCAGGUGGCaUCGugacuguccucuucGCUguugcGGCCGCGa -3' miRNA: 3'- gCCGUCCGCCG-GGU--------------UGAa----CCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 14924 | 0.68 | 0.221532 |
Target: 5'- gCGGCGcGGCGGCUgCAGCgggcGGCgGCGa -3' miRNA: 3'- -GCCGU-CCGCCGG-GUUGaa--CCGgCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 6831 | 0.66 | 0.329953 |
Target: 5'- uGGCGGGCGGgaUCGACaUGGUccuCGCGg -3' miRNA: 3'- gCCGUCCGCCg-GGUUGaACCG---GCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 6486 | 0.66 | 0.299583 |
Target: 5'- aCGGC-GGCGaGCCCGagGCguggacGCCGCAg -3' miRNA: 3'- -GCCGuCCGC-CGGGU--UGaac---CGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 7045 | 0.69 | 0.19448 |
Target: 5'- cCGGCgaucgAGGCGGCCCGGCc-GGacuaCGCGg -3' miRNA: 3'- -GCCG-----UCCGCCGGGUUGaaCCg---GCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 40830 | 0.67 | 0.258157 |
Target: 5'- gCGGCcGGCGGCCgAAC--GGuCCGCc- -3' miRNA: 3'- -GCCGuCCGCCGGgUUGaaCC-GGCGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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