miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26344 3' -62.1 NC_005345.2 + 19099 0.68 0.233222
Target:  5'- aGGCGGagcaGCGGCCCGAg--GGCgGCGc -3'
miRNA:   3'- gCCGUC----CGCCGGGUUgaaCCGgCGUa -5'
26344 3' -62.1 NC_005345.2 + 32607 0.67 0.264722
Target:  5'- aGaCGGGCGGCCCGgacccGCgcagaucgGGCCGCc- -3'
miRNA:   3'- gCcGUCCGCCGGGU-----UGaa------CCGGCGua -5'
26344 3' -62.1 NC_005345.2 + 15785 0.67 0.258157
Target:  5'- uGGCGGGCGGCCC-GCaaGGUgugucaccaccUGCGg -3'
miRNA:   3'- gCCGUCCGCCGGGuUGaaCCG-----------GCGUa -5'
26344 3' -62.1 NC_005345.2 + 40830 0.67 0.258157
Target:  5'- gCGGCcGGCGGCCgAAC--GGuCCGCc- -3'
miRNA:   3'- -GCCGuCCGCCGGgUUGaaCC-GGCGua -5'
26344 3' -62.1 NC_005345.2 + 13376 0.67 0.258157
Target:  5'- gCGGCGGGUGGCUCggUUcgGGCgGgGg -3'
miRNA:   3'- -GCCGUCCGCCGGGuuGAa-CCGgCgUa -5'
26344 3' -62.1 NC_005345.2 + 36209 0.67 0.251726
Target:  5'- uCGGC-GGCcccugaGGaCCCGccgaagagcgACUUGGCCGCGUc -3'
miRNA:   3'- -GCCGuCCG------CC-GGGU----------UGAACCGGCGUA- -5'
26344 3' -62.1 NC_005345.2 + 48041 0.67 0.245427
Target:  5'- gCGGCgcacacGGGCGGCUCGGCaguccGGcCCGCGg -3'
miRNA:   3'- -GCCG------UCCGCCGGGUUGaa---CC-GGCGUa -5'
26344 3' -62.1 NC_005345.2 + 9146 0.68 0.23926
Target:  5'- cCGGCGacGGCGGCCCGGauaaaGUCGCGg -3'
miRNA:   3'- -GCCGU--CCGCCGGGUUgaac-CGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 3649 0.68 0.233222
Target:  5'- gGGCGGGcCGGUUgCGGCcgggGGCCGCGa -3'
miRNA:   3'- gCCGUCC-GCCGG-GUUGaa--CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 10039 0.67 0.264722
Target:  5'- aGGCGGacccGCaGCCCGAacccgGGCCGCGg -3'
miRNA:   3'- gCCGUC----CGcCGGGUUgaa--CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 44016 0.67 0.264722
Target:  5'- uCGGCAcGGcCGGCCCGGCgcuacacGCCGUc- -3'
miRNA:   3'- -GCCGU-CC-GCCGGGUUGaac----CGGCGua -5'
26344 3' -62.1 NC_005345.2 + 13938 0.67 0.271421
Target:  5'- cCGGCGGaGCGaGCUguACUUGuCCGCGa -3'
miRNA:   3'- -GCCGUC-CGC-CGGguUGAACcGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 38671 0.66 0.322152
Target:  5'- cCGGC-GGUGGCCgAGgUaaucccGGCCGCGa -3'
miRNA:   3'- -GCCGuCCGCCGGgUUgAa-----CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 1196 0.66 0.314491
Target:  5'- cCGGaa-GCGGUCgAACUgGGCCGCGc -3'
miRNA:   3'- -GCCgucCGCCGGgUUGAaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 30691 0.66 0.314491
Target:  5'- uCGGCguccgGGGCGGUCUGAUcgggcGGCUGCAg -3'
miRNA:   3'- -GCCG-----UCCGCCGGGUUGaa---CCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 16217 0.66 0.314491
Target:  5'- gGGguGGCGGgggcgucgacgaUCgGGCUcGGCCGCGg -3'
miRNA:   3'- gCCguCCGCC------------GGgUUGAaCCGGCGUa -5'
26344 3' -62.1 NC_005345.2 + 33041 0.66 0.314491
Target:  5'- uCGcGCAGGuCGGCCuCGACUgccucGCCGUg- -3'
miRNA:   3'- -GC-CGUCC-GCCGG-GUUGAac---CGGCGua -5'
26344 3' -62.1 NC_005345.2 + 15066 0.66 0.306968
Target:  5'- gCGGC-GGCGGCCCcgaggagUGGCC-CGg -3'
miRNA:   3'- -GCCGuCCGCCGGGuuga---ACCGGcGUa -5'
26344 3' -62.1 NC_005345.2 + 24468 0.66 0.289477
Target:  5'- uCGGCGucucgaugaugcuGCcGCCgAGCUUGGCCGCGUu -3'
miRNA:   3'- -GCCGUc------------CGcCGGgUUGAACCGGCGUA- -5'
26344 3' -62.1 NC_005345.2 + 32069 0.67 0.278256
Target:  5'- uGGUcgGGGCGGUcgugCCGACgggGGCgGCGUa -3'
miRNA:   3'- gCCG--UCCGCCG----GGUUGaa-CCGgCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.