Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26344 | 3' | -62.1 | NC_005345.2 | + | 33041 | 0.66 | 0.314491 |
Target: 5'- uCGcGCAGGuCGGCCuCGACUgccucGCCGUg- -3' miRNA: 3'- -GC-CGUCC-GCCGG-GUUGAac---CGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 15066 | 0.66 | 0.306968 |
Target: 5'- gCGGC-GGCGGCCCcgaggagUGGCC-CGg -3' miRNA: 3'- -GCCGuCCGCCGGGuuga---ACCGGcGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 24468 | 0.66 | 0.289477 |
Target: 5'- uCGGCGucucgaugaugcuGCcGCCgAGCUUGGCCGCGUu -3' miRNA: 3'- -GCCGUc------------CGcCGGgUUGAACCGGCGUA- -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 32069 | 0.67 | 0.278256 |
Target: 5'- uGGUcgGGGCGGUcgugCCGACgggGGCgGCGUa -3' miRNA: 3'- gCCG--UCCGCCG----GGUUGaa-CCGgCGUA- -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 13938 | 0.67 | 0.271421 |
Target: 5'- cCGGCGGaGCGaGCUguACUUGuCCGCGa -3' miRNA: 3'- -GCCGUC-CGC-CGGguUGAACcGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 44016 | 0.67 | 0.264722 |
Target: 5'- uCGGCAcGGcCGGCCCGGCgcuacacGCCGUc- -3' miRNA: 3'- -GCCGU-CC-GCCGGGUUGaac----CGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 10039 | 0.67 | 0.264722 |
Target: 5'- aGGCGGacccGCaGCCCGAacccgGGCCGCGg -3' miRNA: 3'- gCCGUC----CGcCGGGUUgaa--CCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 32607 | 0.67 | 0.264722 |
Target: 5'- aGaCGGGCGGCCCGgacccGCgcagaucgGGCCGCc- -3' miRNA: 3'- gCcGUCCGCCGGGU-----UGaa------CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 10798 | 0.71 | 0.144976 |
Target: 5'- gCGGCAGGCGGaCCGGCUcgauUGGUgccUGCGg -3' miRNA: 3'- -GCCGUCCGCCgGGUUGA----ACCG---GCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 43123 | 0.7 | 0.161486 |
Target: 5'- cCGGaCcGGUGGCCCAACggccGGCCGgAg -3' miRNA: 3'- -GCC-GuCCGCCGGGUUGaa--CCGGCgUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 23654 | 0.69 | 0.189428 |
Target: 5'- aGGCGGaCGGCgCCGACcagGGUCGCGg -3' miRNA: 3'- gCCGUCcGCCG-GGUUGaa-CCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 36835 | 0.69 | 0.189428 |
Target: 5'- cCGGCGGuGCaGGCCgGACccUGGCgGCAc -3' miRNA: 3'- -GCCGUC-CG-CCGGgUUGa-ACCGgCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 14815 | 0.69 | 0.192952 |
Target: 5'- gCGGCGGGCGcggguguggucgacGCCCGagcaGCUUgccgGGCUGCAg -3' miRNA: 3'- -GCCGUCCGC--------------CGGGU----UGAA----CCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 41278 | 0.71 | 0.130021 |
Target: 5'- cCGGCGGGUGGgUguGCUggGGCCGCc- -3' miRNA: 3'- -GCCGUCCGCCgGguUGAa-CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 31192 | 0.72 | 0.12309 |
Target: 5'- cCGGCAGGCGGCCgAGCcggacGCCGgAc -3' miRNA: 3'- -GCCGUCCGCCGGgUUGaac--CGGCgUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 11491 | 0.72 | 0.12309 |
Target: 5'- cCGcGCAGGCGGCCCGcaccgacgccggACUgcaGCCGCu- -3' miRNA: 3'- -GC-CGUCCGCCGGGU------------UGAac-CGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 2044 | 0.76 | 0.061142 |
Target: 5'- gGGCccGGcGCGGCCCGGCg-GGCCGCGg -3' miRNA: 3'- gCCG--UC-CGCCGGGUUGaaCCGGCGUa -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 8684 | 0.77 | 0.051094 |
Target: 5'- gCGGCgguggccgugacguGGGCGGCCCGGCUgUGGCCGa-- -3' miRNA: 3'- -GCCG--------------UCCGCCGGGUUGA-ACCGGCgua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 32518 | 0.81 | 0.021708 |
Target: 5'- cCGGCGGGCGGCCCGAuCUgcgcggguccgGGCCGCc- -3' miRNA: 3'- -GCCGUCCGCCGGGUU-GAa----------CCGGCGua -5' |
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26344 | 3' | -62.1 | NC_005345.2 | + | 6831 | 0.66 | 0.329953 |
Target: 5'- uGGCGGGCGGgaUCGACaUGGUccuCGCGg -3' miRNA: 3'- gCCGUCCGCCg-GGUUGaACCG---GCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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