miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26345 3' -50.8 NC_005345.2 + 31472 0.66 0.916822
Target:  5'- gGUUCGuacGGAUCGAGCGGa-UCGGcGg- -3'
miRNA:   3'- -CGAGCu--UCUAGCUCGUCaaAGCC-Cac -5'
26345 3' -50.8 NC_005345.2 + 22298 0.66 0.910266
Target:  5'- gGCgaCGuGGGUCGAGguGUcgcgguccggUUCGGGUc -3'
miRNA:   3'- -CGa-GCuUCUAGCUCguCA----------AAGCCCAc -5'
26345 3' -50.8 NC_005345.2 + 23106 0.66 0.910266
Target:  5'- cGCUCGccGAggCGAGCgAGgcggcgagUCGGGUc -3'
miRNA:   3'- -CGAGCuuCUa-GCUCG-UCaa------AGCCCAc -5'
26345 3' -50.8 NC_005345.2 + 12497 0.66 0.903417
Target:  5'- aGCUCGccGAgUGGucGCAGUacgCGGGUGa -3'
miRNA:   3'- -CGAGCuuCUaGCU--CGUCAaa-GCCCAC- -5'
26345 3' -50.8 NC_005345.2 + 40207 0.66 0.896278
Target:  5'- aGCUCGGcAGcuacGUCGAGaCGGUgccggUCGGGc- -3'
miRNA:   3'- -CGAGCU-UC----UAGCUC-GUCAa----AGCCCac -5'
26345 3' -50.8 NC_005345.2 + 5730 0.66 0.896278
Target:  5'- gGCUCGGuccGGGcccgcCGGGCGGUgccgaUCGGGUc -3'
miRNA:   3'- -CGAGCU---UCUa----GCUCGUCAa----AGCCCAc -5'
26345 3' -50.8 NC_005345.2 + 17859 0.67 0.881149
Target:  5'- gGCUCGggGugAUCGGGCgaucGGUcacgggCGGGUc -3'
miRNA:   3'- -CGAGCuuC--UAGCUCG----UCAaa----GCCCAc -5'
26345 3' -50.8 NC_005345.2 + 33501 0.67 0.881149
Target:  5'- gGCgCGGAGAUcggCGAGCAGUc-CGGGc- -3'
miRNA:   3'- -CGaGCUUCUA---GCUCGUCAaaGCCCac -5'
26345 3' -50.8 NC_005345.2 + 10188 0.67 0.87317
Target:  5'- cCUCGggGAUgGGGCAGUcgUCGcgcauGUGc -3'
miRNA:   3'- cGAGCuuCUAgCUCGUCAa-AGCc----CAC- -5'
26345 3' -50.8 NC_005345.2 + 12870 0.67 0.864923
Target:  5'- gGC-CGAgcGGcUCGGGCGGgucguugCGGGUGg -3'
miRNA:   3'- -CGaGCU--UCuAGCUCGUCaaa----GCCCAC- -5'
26345 3' -50.8 NC_005345.2 + 17283 0.68 0.838657
Target:  5'- aGCUCGgcGGgugCGGguGCGGgugCGGGUGc -3'
miRNA:   3'- -CGAGCuuCUa--GCU--CGUCaaaGCCCAC- -5'
26345 3' -50.8 NC_005345.2 + 35802 0.68 0.828488
Target:  5'- cGUUCGGccgccgcGGG-CGAGCAGUUUCGGc-- -3'
miRNA:   3'- -CGAGCU-------UCUaGCUCGUCAAAGCCcac -5'
26345 3' -50.8 NC_005345.2 + 14801 0.69 0.790373
Target:  5'- cGCuUCGAc-GUCGAGCGGcgggcgCGGGUGu -3'
miRNA:   3'- -CG-AGCUucUAGCUCGUCaaa---GCCCAC- -5'
26345 3' -50.8 NC_005345.2 + 36030 0.69 0.76974
Target:  5'- -aUCGccAAGAUCGGGCAGUc-CGGGa- -3'
miRNA:   3'- cgAGC--UUCUAGCUCGUCAaaGCCCac -5'
26345 3' -50.8 NC_005345.2 + 24313 0.71 0.648104
Target:  5'- cGCUCGAucAGAcCGAGgAGUggCGGGa- -3'
miRNA:   3'- -CGAGCU--UCUaGCUCgUCAaaGCCCac -5'
26345 3' -50.8 NC_005345.2 + 6302 0.72 0.625314
Target:  5'- cGCUCGggGcGUCGugguGCAGguaUCGGGa- -3'
miRNA:   3'- -CGAGCuuC-UAGCu---CGUCaa-AGCCCac -5'
26345 3' -50.8 NC_005345.2 + 17127 0.72 0.602549
Target:  5'- gGCUCGGguucgaccucGGGcUCGGGCAGcg-CGGGUGc -3'
miRNA:   3'- -CGAGCU----------UCU-AGCUCGUCaaaGCCCAC- -5'
26345 3' -50.8 NC_005345.2 + 21769 0.73 0.568628
Target:  5'- uGCUCGcuGGcgggCGAGcCGGggUCGGGUGg -3'
miRNA:   3'- -CGAGCuuCUa---GCUC-GUCaaAGCCCAC- -5'
26345 3' -50.8 NC_005345.2 + 13367 0.73 0.535204
Target:  5'- gGCUCGGu--UCGGGCGGgggUCGGGg- -3'
miRNA:   3'- -CGAGCUucuAGCUCGUCaa-AGCCCac -5'
26345 3' -50.8 NC_005345.2 + 17324 0.73 0.524212
Target:  5'- aGUUCGggGAUCG-GCGGgugcaUGGGUGc -3'
miRNA:   3'- -CGAGCuuCUAGCuCGUCaaa--GCCCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.