miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26345 5' -54.4 NC_005345.2 + 1145 0.66 0.757074
Target:  5'- cGGUUgGCGGucGUgacUGCUCGGUCCgGCu -3'
miRNA:   3'- -CCGAgCGCU--CGac-AUGAGCUAGGaCG- -5'
26345 5' -54.4 NC_005345.2 + 46538 0.66 0.746626
Target:  5'- aGGC-CGCGGGC-GUugUCGAUgUgggugucgGCg -3'
miRNA:   3'- -CCGaGCGCUCGaCAugAGCUAgGa-------CG- -5'
26345 5' -54.4 NC_005345.2 + 34978 0.66 0.746626
Target:  5'- gGGUUCGaCGGGCUcaUGgUCGGUCUgcggGCg -3'
miRNA:   3'- -CCGAGC-GCUCGAc-AUgAGCUAGGa---CG- -5'
26345 5' -54.4 NC_005345.2 + 23700 0.66 0.746626
Target:  5'- cGCaCGCGAGCgGUACggGGcUCUGCg -3'
miRNA:   3'- cCGaGCGCUCGaCAUGagCUaGGACG- -5'
26345 5' -54.4 NC_005345.2 + 37531 0.66 0.746626
Target:  5'- uGCUCgGCGGGCUGUGaucccCUCG--CCgGCa -3'
miRNA:   3'- cCGAG-CGCUCGACAU-----GAGCuaGGaCG- -5'
26345 5' -54.4 NC_005345.2 + 40684 0.66 0.744523
Target:  5'- cGGCUCGCgGAGagguacaccccGUGCUCGccggcugcgaucGUCCaUGCg -3'
miRNA:   3'- -CCGAGCG-CUCga---------CAUGAGC------------UAGG-ACG- -5'
26345 5' -54.4 NC_005345.2 + 12596 0.66 0.736061
Target:  5'- cGCUcCGCGAGCUGcGCgaGAUCacccgcguaCUGCg -3'
miRNA:   3'- cCGA-GCGCUCGACaUGagCUAG---------GACG- -5'
26345 5' -54.4 NC_005345.2 + 39489 0.66 0.736061
Target:  5'- gGGUcgaGCGGGUcGgcCUCGAUgCUGCg -3'
miRNA:   3'- -CCGag-CGCUCGaCauGAGCUAgGACG- -5'
26345 5' -54.4 NC_005345.2 + 30405 0.66 0.725388
Target:  5'- cGGCggCGCGGGCcugGUAgucCUCGA-CCguUGCg -3'
miRNA:   3'- -CCGa-GCGCUCGa--CAU---GAGCUaGG--ACG- -5'
26345 5' -54.4 NC_005345.2 + 15377 0.66 0.725388
Target:  5'- cGGCagCGCGGGg-GUACUUGGcccgggugcugCCUGCg -3'
miRNA:   3'- -CCGa-GCGCUCgaCAUGAGCUa----------GGACG- -5'
26345 5' -54.4 NC_005345.2 + 4612 0.66 0.725388
Target:  5'- cGCUCGCG-GC-GUACcUGGUCgaGCu -3'
miRNA:   3'- cCGAGCGCuCGaCAUGaGCUAGgaCG- -5'
26345 5' -54.4 NC_005345.2 + 36286 0.66 0.725388
Target:  5'- aGGCUCGCGGaCUGgcccaccauuUGCagGG-CCUGCa -3'
miRNA:   3'- -CCGAGCGCUcGAC----------AUGagCUaGGACG- -5'
26345 5' -54.4 NC_005345.2 + 36088 0.66 0.714621
Target:  5'- uGCUCgGCGGGCUGaaagACaaGGUCCUcgacGCg -3'
miRNA:   3'- cCGAG-CGCUCGACa---UGagCUAGGA----CG- -5'
26345 5' -54.4 NC_005345.2 + 31857 0.67 0.69285
Target:  5'- cGGaCUgGuCGGGCUcGUACUCGGUgCCguccGCg -3'
miRNA:   3'- -CC-GAgC-GCUCGA-CAUGAGCUA-GGa---CG- -5'
26345 5' -54.4 NC_005345.2 + 8021 0.67 0.69285
Target:  5'- gGGCaugugCGCGAGCg--ACcCGAUCCgGUa -3'
miRNA:   3'- -CCGa----GCGCUCGacaUGaGCUAGGaCG- -5'
26345 5' -54.4 NC_005345.2 + 39146 0.67 0.69285
Target:  5'- cGCg-GCGAGC-GUccACUCGAUcgccgCCUGCg -3'
miRNA:   3'- cCGagCGCUCGaCA--UGAGCUA-----GGACG- -5'
26345 5' -54.4 NC_005345.2 + 27343 0.67 0.678565
Target:  5'- uGGCggggCGCGguacuuccgccgucGGCUGUccgGCUCGAagaaCUGCg -3'
miRNA:   3'- -CCGa---GCGC--------------UCGACA---UGAGCUag--GACG- -5'
26345 5' -54.4 NC_005345.2 + 14379 0.67 0.670839
Target:  5'- aGCUCgGCGAccgGCcgGUGC-CGAUCCgGCu -3'
miRNA:   3'- cCGAG-CGCU---CGa-CAUGaGCUAGGaCG- -5'
26345 5' -54.4 NC_005345.2 + 46823 0.67 0.670839
Target:  5'- uGUUCGCGGG-UGUGCUgGgGUgCUGCa -3'
miRNA:   3'- cCGAGCGCUCgACAUGAgC-UAgGACG- -5'
26345 5' -54.4 NC_005345.2 + 8950 0.67 0.670839
Target:  5'- gGGCU-GCGGGUgcucggGCUCGA-CCUGUc -3'
miRNA:   3'- -CCGAgCGCUCGaca---UGAGCUaGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.