miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26346 3' -57.9 NC_005345.2 + 14215 0.66 0.556397
Target:  5'- -cCGGgGCGCUGCggcgGcCACGUGGgggCGGg -3'
miRNA:   3'- cuGCCgUGCGGCGa---C-GUGCACUa--GCU- -5'
26346 3' -57.9 NC_005345.2 + 28403 0.66 0.556397
Target:  5'- cGGCGGCA-GCgGCagGCAgGgcgGAUCGGu -3'
miRNA:   3'- -CUGCCGUgCGgCGa-CGUgCa--CUAGCU- -5'
26346 3' -57.9 NC_005345.2 + 30720 0.66 0.556397
Target:  5'- uGAuCGGCGaggaccUGCUGCcGCACGUcGUCGAg -3'
miRNA:   3'- -CU-GCCGU------GCGGCGaCGUGCAcUAGCU- -5'
26346 3' -57.9 NC_005345.2 + 4189 0.66 0.556397
Target:  5'- gGGCGGCAgGCCGUgcaggcgGCGCGgcaGAUg-- -3'
miRNA:   3'- -CUGCCGUgCGGCGa------CGUGCa--CUAgcu -5'
26346 3' -57.9 NC_005345.2 + 27230 0.66 0.556397
Target:  5'- cGGCGGgACGCCGCgcaGCGCcucgGGcagcUCGAc -3'
miRNA:   3'- -CUGCCgUGCGGCGa--CGUGca--CU----AGCU- -5'
26346 3' -57.9 NC_005345.2 + 22036 0.66 0.556397
Target:  5'- --gGGCAuCGgCGCggGC-CGUGAUCGGc -3'
miRNA:   3'- cugCCGU-GCgGCGa-CGuGCACUAGCU- -5'
26346 3' -57.9 NC_005345.2 + 5230 0.66 0.556397
Target:  5'- gGGCGGCGacgaGUCGCucgUGCACGguGUCGGc -3'
miRNA:   3'- -CUGCCGUg---CGGCG---ACGUGCacUAGCU- -5'
26346 3' -57.9 NC_005345.2 + 7107 0.66 0.549991
Target:  5'- aACGGCccgcgacgugugGCGCCGCgcgaaccgggcgggGCACGUGGccCGGg -3'
miRNA:   3'- cUGCCG------------UGCGGCGa-------------CGUGCACUa-GCU- -5'
26346 3' -57.9 NC_005345.2 + 12144 0.66 0.545733
Target:  5'- aGGCGGCAUGCCgagggaGCUGCGCacgGGgcUCGc -3'
miRNA:   3'- -CUGCCGUGCGG------CGACGUGca-CU--AGCu -5'
26346 3' -57.9 NC_005345.2 + 26844 0.66 0.545733
Target:  5'- -cCGGCGCGCCGagcgcggGCaACGUGccCGAc -3'
miRNA:   3'- cuGCCGUGCGGCga-----CG-UGCACuaGCU- -5'
26346 3' -57.9 NC_005345.2 + 22250 0.66 0.545733
Target:  5'- cGACGGCGaGgUGCUGC-CGUGggCGc -3'
miRNA:   3'- -CUGCCGUgCgGCGACGuGCACuaGCu -5'
26346 3' -57.9 NC_005345.2 + 4386 0.66 0.545733
Target:  5'- gGACGGC--GCCGCaUGaGCGcGAUCGAc -3'
miRNA:   3'- -CUGCCGugCGGCG-ACgUGCaCUAGCU- -5'
26346 3' -57.9 NC_005345.2 + 31309 0.66 0.545733
Target:  5'- -cCGG-GCGCUGCUGCGCGgucugGAgggCGGc -3'
miRNA:   3'- cuGCCgUGCGGCGACGUGCa----CUa--GCU- -5'
26346 3' -57.9 NC_005345.2 + 7933 0.66 0.545733
Target:  5'- cACGGCAgGCUGUacaccUGCGCGagggUGAUCa- -3'
miRNA:   3'- cUGCCGUgCGGCG-----ACGUGC----ACUAGcu -5'
26346 3' -57.9 NC_005345.2 + 10070 0.66 0.545733
Target:  5'- cGCGGCGagGCucuuCGCUuuCACGUGGUCGAg -3'
miRNA:   3'- cUGCCGUg-CG----GCGAc-GUGCACUAGCU- -5'
26346 3' -57.9 NC_005345.2 + 33415 0.66 0.54467
Target:  5'- gGGCGGCACGCCgGCUacGCcgcgaccGCGUGGa--- -3'
miRNA:   3'- -CUGCCGUGCGG-CGA--CG-------UGCACUagcu -5'
26346 3' -57.9 NC_005345.2 + 6487 0.66 0.539366
Target:  5'- cGGCGGCgagcccgaggcguggACGCCGCaggGCuCGaaGAUCGAg -3'
miRNA:   3'- -CUGCCG---------------UGCGGCGa--CGuGCa-CUAGCU- -5'
26346 3' -57.9 NC_005345.2 + 22074 0.66 0.535136
Target:  5'- -cCGGCAUGCCGCcGUGCGgcagCGGc -3'
miRNA:   3'- cuGCCGUGCGGCGaCGUGCacuaGCU- -5'
26346 3' -57.9 NC_005345.2 + 22350 0.66 0.530917
Target:  5'- cGCGGguCGCUGCcGCACGggcgacguauugcGGUCGGu -3'
miRNA:   3'- cUGCCguGCGGCGaCGUGCa------------CUAGCU- -5'
26346 3' -57.9 NC_005345.2 + 9775 0.66 0.524612
Target:  5'- cGCGGCucACGCgGCgGCcCGcUGAUCGGc -3'
miRNA:   3'- cUGCCG--UGCGgCGaCGuGC-ACUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.