miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26346 5' -54.8 NC_005345.2 + 12484 0.66 0.732499
Target:  5'- cCUCGAcgucaUCGGCcgACUcgcGCCUcGCCGcUGCCu -3'
miRNA:   3'- cGAGCU-----AGUCG--UGA---CGGA-CGGC-AUGG- -5'
26346 5' -54.8 NC_005345.2 + 31538 0.66 0.732499
Target:  5'- cGCUCGAUCcGUACgaaCCgcGCCG-GCCu -3'
miRNA:   3'- -CGAGCUAGuCGUGac-GGa-CGGCaUGG- -5'
26346 5' -54.8 NC_005345.2 + 43686 0.66 0.732499
Target:  5'- gGCU-GAUCAGC-CUcGCCgcguggGCCG-GCCu -3'
miRNA:   3'- -CGAgCUAGUCGuGA-CGGa-----CGGCaUGG- -5'
26346 5' -54.8 NC_005345.2 + 10851 0.66 0.712051
Target:  5'- aGCUgCGGUgGGCggACUGCCgcacgcggcgcgucCCGUGCCc -3'
miRNA:   3'- -CGA-GCUAgUCG--UGACGGac------------GGCAUGG- -5'
26346 5' -54.8 NC_005345.2 + 25244 0.66 0.710966
Target:  5'- gGCUCG-UCGGCGCU-CgUGCgGcACCu -3'
miRNA:   3'- -CGAGCuAGUCGUGAcGgACGgCaUGG- -5'
26346 5' -54.8 NC_005345.2 + 24565 0.66 0.710966
Target:  5'- cGCUCG-UC-GC-CgGCCUGCgGUACg -3'
miRNA:   3'- -CGAGCuAGuCGuGaCGGACGgCAUGg -5'
26346 5' -54.8 NC_005345.2 + 34569 0.66 0.70444
Target:  5'- cGgUCGAUCAcggcgacgaugcucuGCAUcGCCUGCCGcuugaacACCu -3'
miRNA:   3'- -CgAGCUAGU---------------CGUGaCGGACGGCa------UGG- -5'
26346 5' -54.8 NC_005345.2 + 10902 0.66 0.700075
Target:  5'- aGCUCGGcgcCGGCuCgUGUCUGCCGcaggcACCa -3'
miRNA:   3'- -CGAGCUa--GUCGuG-ACGGACGGCa----UGG- -5'
26346 5' -54.8 NC_005345.2 + 1112 0.66 0.700075
Target:  5'- gGCUCGAUguGCGCgGCCcaguUCG-ACCg -3'
miRNA:   3'- -CGAGCUAguCGUGaCGGac--GGCaUGG- -5'
26346 5' -54.8 NC_005345.2 + 14638 0.66 0.700075
Target:  5'- uGC-CGAcaCGGCcggGCCcgUGCCGUACCg -3'
miRNA:   3'- -CGaGCUa-GUCGugaCGG--ACGGCAUGG- -5'
26346 5' -54.8 NC_005345.2 + 7750 0.66 0.700075
Target:  5'- gGCUCGA-CGGCAC-GCCgcUGCaCGUgAUCg -3'
miRNA:   3'- -CGAGCUaGUCGUGaCGG--ACG-GCA-UGG- -5'
26346 5' -54.8 NC_005345.2 + 14457 0.66 0.689117
Target:  5'- aGC-CgGAUCGGCACcgGCCggucGCCGaGCUg -3'
miRNA:   3'- -CGaG-CUAGUCGUGa-CGGa---CGGCaUGG- -5'
26346 5' -54.8 NC_005345.2 + 46866 0.66 0.689117
Target:  5'- uGCUUGG-CGGCGCaGCCcgGUCGcgACCu -3'
miRNA:   3'- -CGAGCUaGUCGUGaCGGa-CGGCa-UGG- -5'
26346 5' -54.8 NC_005345.2 + 32033 0.66 0.678102
Target:  5'- cGCUgGAUcCGGCaugGCUGCCgGUCGgGCUg -3'
miRNA:   3'- -CGAgCUA-GUCG---UGACGGaCGGCaUGG- -5'
26346 5' -54.8 NC_005345.2 + 43393 0.66 0.678102
Target:  5'- aGCcggCGuagGGCACgaGCCUGCUGUGCa -3'
miRNA:   3'- -CGa--GCuagUCGUGa-CGGACGGCAUGg -5'
26346 5' -54.8 NC_005345.2 + 30853 0.66 0.678102
Target:  5'- -gUCGGUCA-CGgUG-UUGCCGUACCg -3'
miRNA:   3'- cgAGCUAGUcGUgACgGACGGCAUGG- -5'
26346 5' -54.8 NC_005345.2 + 24718 0.66 0.678102
Target:  5'- cGCUCGAUCGGCGaccaacccgGCCcGCaCGgcggAUCg -3'
miRNA:   3'- -CGAGCUAGUCGUga-------CGGaCG-GCa---UGG- -5'
26346 5' -54.8 NC_005345.2 + 23172 0.66 0.678102
Target:  5'- cGCUCGccUCGGCGagcGCCUGCuCGaACUg -3'
miRNA:   3'- -CGAGCu-AGUCGUga-CGGACG-GCaUGG- -5'
26346 5' -54.8 NC_005345.2 + 48368 0.67 0.667043
Target:  5'- gGCcCGGUCGGCAUcccccGCC-GCCG-GCCg -3'
miRNA:   3'- -CGaGCUAGUCGUGa----CGGaCGGCaUGG- -5'
26346 5' -54.8 NC_005345.2 + 35326 0.67 0.667043
Target:  5'- aGCUuccgggCGAUCGGCGCgGCCgGCgCGUGg- -3'
miRNA:   3'- -CGA------GCUAGUCGUGaCGGaCG-GCAUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.