miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26346 5' -54.8 NC_005345.2 + 7789 1.14 0.000397
Target:  5'- uGCUCGAUCAGCACUGCCUGCCGUACCg -3'
miRNA:   3'- -CGAGCUAGUCGUGACGGACGGCAUGG- -5'
26346 5' -54.8 NC_005345.2 + 2132 0.68 0.61146
Target:  5'- gGUUCGGgccgCGGCuGCUGCCUcGCU-UGCCg -3'
miRNA:   3'- -CGAGCUa---GUCG-UGACGGA-CGGcAUGG- -5'
26346 5' -54.8 NC_005345.2 + 48857 0.67 0.62258
Target:  5'- gGCg-GggCGGUGCUGCgUGCCcUACCg -3'
miRNA:   3'- -CGagCuaGUCGUGACGgACGGcAUGG- -5'
26346 5' -54.8 NC_005345.2 + 43686 0.66 0.732499
Target:  5'- gGCU-GAUCAGC-CUcGCCgcguggGCCG-GCCu -3'
miRNA:   3'- -CGAgCUAGUCGuGA-CGGa-----CGGCaUGG- -5'
26346 5' -54.8 NC_005345.2 + 49007 0.72 0.384855
Target:  5'- cGCUCGGUagaCAGCACucuacgcauugUGgCUGCUGUGCa -3'
miRNA:   3'- -CGAGCUA---GUCGUG-----------ACgGACGGCAUGg -5'
26346 5' -54.8 NC_005345.2 + 35408 0.71 0.393968
Target:  5'- uGCgggCGGUCGGCACcGCCcUGCaGUACg -3'
miRNA:   3'- -CGa--GCUAGUCGUGaCGG-ACGgCAUGg -5'
26346 5' -54.8 NC_005345.2 + 27028 0.71 0.422128
Target:  5'- cCUCGAUCGGguCgUGCCgGUCGUugugGCCa -3'
miRNA:   3'- cGAGCUAGUCguG-ACGGaCGGCA----UGG- -5'
26346 5' -54.8 NC_005345.2 + 21977 0.7 0.441561
Target:  5'- cGC-CGAUgccCGGUACUGCUcggGCCGcUGCCg -3'
miRNA:   3'- -CGaGCUA---GUCGUGACGGa--CGGC-AUGG- -5'
26346 5' -54.8 NC_005345.2 + 14557 0.69 0.502704
Target:  5'- cGCcCGGUaCGGCACggGCCcgGCCGUGUCg -3'
miRNA:   3'- -CGaGCUA-GUCGUGa-CGGa-CGGCAUGG- -5'
26346 5' -54.8 NC_005345.2 + 5648 0.68 0.600359
Target:  5'- --cCGAUCGGCACcGCCcgGCgGgcCCg -3'
miRNA:   3'- cgaGCUAGUCGUGaCGGa-CGgCauGG- -5'
26346 5' -54.8 NC_005345.2 + 24012 0.69 0.534637
Target:  5'- gGCgCGAUC-GCGCUcGCCgagGCgUGUGCCg -3'
miRNA:   3'- -CGaGCUAGuCGUGA-CGGa--CG-GCAUGG- -5'
26346 5' -54.8 NC_005345.2 + 43937 0.69 0.502704
Target:  5'- --aCGGcgugUAGCGCcggGCCgGCCGUGCCg -3'
miRNA:   3'- cgaGCUa---GUCGUGa--CGGaCGGCAUGG- -5'
26346 5' -54.8 NC_005345.2 + 16950 0.81 0.095859
Target:  5'- cGCUCGAcgagacgccUCGGCACcucgGCCggcUGCCGUGCCc -3'
miRNA:   3'- -CGAGCU---------AGUCGUGa---CGG---ACGGCAUGG- -5'
26346 5' -54.8 NC_005345.2 + 43647 0.69 0.54436
Target:  5'- uCUCcGUCAuGCGCaccgucgUGCCUGCCGccGCCg -3'
miRNA:   3'- cGAGcUAGU-CGUG-------ACGGACGGCa-UGG- -5'
26346 5' -54.8 NC_005345.2 + 26028 0.72 0.341432
Target:  5'- cGCggGAgcgcacCGGCGCUcGCCUGCCGUggggACCg -3'
miRNA:   3'- -CGagCUa-----GUCGUGA-CGGACGGCA----UGG- -5'
26346 5' -54.8 NC_005345.2 + 46346 0.7 0.492243
Target:  5'- aGCaggCGAUCGagcGCACgccggcGCCgacaaGCCGUACCg -3'
miRNA:   3'- -CGa--GCUAGU---CGUGa-----CGGa----CGGCAUGG- -5'
26346 5' -54.8 NC_005345.2 + 9697 0.68 0.556319
Target:  5'- gGC-CGAUCAGCggGCcGCCgcgugaGCCGcGCCg -3'
miRNA:   3'- -CGaGCUAGUCG--UGaCGGa-----CGGCaUGG- -5'
26346 5' -54.8 NC_005345.2 + 14647 0.68 0.615907
Target:  5'- cCUCGAccgcguccUCGGCACcgGCCgggcggcgucgccgaUGCCGgGCCg -3'
miRNA:   3'- cGAGCU--------AGUCGUGa-CGG---------------ACGGCaUGG- -5'
26346 5' -54.8 NC_005345.2 + 35003 0.72 0.349827
Target:  5'- uGCgggCGGUCGGCgacGCUGCCgugugGCUGUGgCa -3'
miRNA:   3'- -CGa--GCUAGUCG---UGACGGa----CGGCAUgG- -5'
26346 5' -54.8 NC_005345.2 + 7859 0.71 0.422128
Target:  5'- cCUCGcgCAgguGUACaGCCUGCCGUgggacGCCg -3'
miRNA:   3'- cGAGCuaGU---CGUGaCGGACGGCA-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.