miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26347 3' -57.4 NC_005345.2 + 13625 0.66 0.481151
Target:  5'- cGUGCCCG---UGGAuGUGGucgacggacagcugcCCGCGGUCc -3'
miRNA:   3'- -UACGGGUucaACCU-CACC---------------GGCGUCAG- -5'
26347 3' -57.4 NC_005345.2 + 37566 0.67 0.456615
Target:  5'- -gGCCCGAGgcGGgcgcAGgcgGGCUGCAGg- -3'
miRNA:   3'- uaCGGGUUCaaCC----UCa--CCGGCGUCag -5'
26347 3' -57.4 NC_005345.2 + 24988 0.67 0.456615
Target:  5'- aGUGCCCGucGUcGaGGUGcucGCCGCGGUCg -3'
miRNA:   3'- -UACGGGUu-CAaCcUCAC---CGGCGUCAG- -5'
26347 3' -57.4 NC_005345.2 + 30698 0.67 0.446591
Target:  5'- -gGCC--GGcUGcGGGUGGCCGCGGUg -3'
miRNA:   3'- uaCGGguUCaAC-CUCACCGGCGUCAg -5'
26347 3' -57.4 NC_005345.2 + 7355 0.68 0.406826
Target:  5'- -gGCCCGcgguggcgcagccGGgcgGGGGUGGCCGCugauGUg -3'
miRNA:   3'- uaCGGGU-------------UCaa-CCUCACCGGCGu---CAg -5'
26347 3' -57.4 NC_005345.2 + 6495 0.68 0.398398
Target:  5'- -aGCCCGAGgcgUGGAc--GCCGCAGg- -3'
miRNA:   3'- uaCGGGUUCa--ACCUcacCGGCGUCag -5'
26347 3' -57.4 NC_005345.2 + 39514 0.69 0.336799
Target:  5'- gGUGCCCGAG-UGGAcccGGCCGaucgagcaGGUCg -3'
miRNA:   3'- -UACGGGUUCaACCUca-CCGGCg-------UCAG- -5'
26347 3' -57.4 NC_005345.2 + 30518 0.7 0.304842
Target:  5'- cGUGCCCGGaucgGGGGUGuGCC-CGGUCg -3'
miRNA:   3'- -UACGGGUUcaa-CCUCAC-CGGcGUCAG- -5'
26347 3' -57.4 NC_005345.2 + 42861 0.71 0.268238
Target:  5'- -gGCgCCGGGUUGGccgcGGUGGCguUGCGGUCc -3'
miRNA:   3'- uaCG-GGUUCAACC----UCACCG--GCGUCAG- -5'
26347 3' -57.4 NC_005345.2 + 1849 0.71 0.248028
Target:  5'- aGUGCCCGAGgaaucacggGGAGUGGUgG-AGUCc -3'
miRNA:   3'- -UACGGGUUCaa-------CCUCACCGgCgUCAG- -5'
26347 3' -57.4 NC_005345.2 + 7967 0.95 0.004019
Target:  5'- cAUGCCCAAGUUGGAGU-GCCGCAGUCg -3'
miRNA:   3'- -UACGGGUUCAACCUCAcCGGCGUCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.