miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26347 5' -57.2 NC_005345.2 + 45787 0.66 0.620523
Target:  5'- gCGGCgGGCGGCgaUGCGGgccccgagcucgCGCGGGc -3'
miRNA:   3'- aGUUGgCCGCCG--GCGCCaaa---------GUGCUC- -5'
26347 5' -57.2 NC_005345.2 + 14938 0.66 0.61617
Target:  5'- gCAGCgGGCGGCgGCGaaGgaUCGCGc- -3'
miRNA:   3'- aGUUGgCCGCCGgCGC--CaaAGUGCuc -5'
26347 5' -57.2 NC_005345.2 + 1892 0.66 0.61617
Target:  5'- -aGACCcgcgaGGCaGGCCGaCGGUUgUACGGGc -3'
miRNA:   3'- agUUGG-----CCG-CCGGC-GCCAAaGUGCUC- -5'
26347 5' -57.2 NC_005345.2 + 32422 0.66 0.61617
Target:  5'- aUCuacCCGGCGGCCGaCGG---CACGc- -3'
miRNA:   3'- -AGuu-GGCCGCCGGC-GCCaaaGUGCuc -5'
26347 5' -57.2 NC_005345.2 + 6615 0.66 0.61617
Target:  5'- -gGACCGGCGGCgguugcgcccgGCGGUgcgacggcgUCACcGAGc -3'
miRNA:   3'- agUUGGCCGCCGg----------CGCCAa--------AGUG-CUC- -5'
26347 5' -57.2 NC_005345.2 + 10960 0.66 0.61617
Target:  5'- aUCGAUgaCGuGCGGgUGCGGg--CACGGGa -3'
miRNA:   3'- -AGUUG--GC-CGCCgGCGCCaaaGUGCUC- -5'
26347 5' -57.2 NC_005345.2 + 7532 0.66 0.61617
Target:  5'- gUCGAUC-GCuGCCGCGG--UCACGAu -3'
miRNA:   3'- -AGUUGGcCGcCGGCGCCaaAGUGCUc -5'
26347 5' -57.2 NC_005345.2 + 29179 0.66 0.61617
Target:  5'- ----gCGGCGGCCGaucuuggacuCGGUguccCACGAGc -3'
miRNA:   3'- aguugGCCGCCGGC----------GCCAaa--GUGCUC- -5'
26347 5' -57.2 NC_005345.2 + 431 0.66 0.615083
Target:  5'- gCGGCCGGUGuCC-CGGUUcuucaccUCGCGGGc -3'
miRNA:   3'- aGUUGGCCGCcGGcGCCAA-------AGUGCUC- -5'
26347 5' -57.2 NC_005345.2 + 10727 0.66 0.6053
Target:  5'- gUCGGCCGGaUGGCCGCGcucgauGUcgUCGcCGAc -3'
miRNA:   3'- -AGUUGGCC-GCCGGCGC------CAa-AGU-GCUc -5'
26347 5' -57.2 NC_005345.2 + 10618 0.66 0.6053
Target:  5'- gCGGCCGGuCGGCC-CGGgu---CGAGc -3'
miRNA:   3'- aGUUGGCC-GCCGGcGCCaaaguGCUC- -5'
26347 5' -57.2 NC_005345.2 + 42122 0.66 0.6053
Target:  5'- gCAGCCGGUaacucgGGCUGCcGGU---GCGGGg -3'
miRNA:   3'- aGUUGGCCG------CCGGCG-CCAaagUGCUC- -5'
26347 5' -57.2 NC_005345.2 + 41275 0.66 0.6053
Target:  5'- -gGACCGGCGGgUG-GGUgugCugGGGc -3'
miRNA:   3'- agUUGGCCGCCgGCgCCAaa-GugCUC- -5'
26347 5' -57.2 NC_005345.2 + 17284 0.66 0.6053
Target:  5'- -aAGCuCGGCGGgUGCGGg--UGCGGGu -3'
miRNA:   3'- agUUG-GCCGCCgGCGCCaaaGUGCUC- -5'
26347 5' -57.2 NC_005345.2 + 36453 0.66 0.594453
Target:  5'- aCAcGCC-GCGGCCGCGGag-CGCGc- -3'
miRNA:   3'- aGU-UGGcCGCCGGCGCCaaaGUGCuc -5'
26347 5' -57.2 NC_005345.2 + 29117 0.66 0.594453
Target:  5'- -aGAUCGGCcGCCGCGaGggacUCGCGAa -3'
miRNA:   3'- agUUGGCCGcCGGCGC-Caa--AGUGCUc -5'
26347 5' -57.2 NC_005345.2 + 27193 0.66 0.594453
Target:  5'- cCGGCCGGUGccGCCGUGGcg-C-CGAGc -3'
miRNA:   3'- aGUUGGCCGC--CGGCGCCaaaGuGCUC- -5'
26347 5' -57.2 NC_005345.2 + 10665 0.66 0.594453
Target:  5'- -gGACCGGUgGGgCGCGG---CGCGGGa -3'
miRNA:   3'- agUUGGCCG-CCgGCGCCaaaGUGCUC- -5'
26347 5' -57.2 NC_005345.2 + 33093 0.66 0.583636
Target:  5'- cCGGCCGGCGGCgucccgGCGGUacagaUCGCu-- -3'
miRNA:   3'- aGUUGGCCGCCGg-----CGCCAa----AGUGcuc -5'
26347 5' -57.2 NC_005345.2 + 37832 0.66 0.583636
Target:  5'- aCGGcCCGGgGGCCcugacuguGCGGUcggUCGCGGc -3'
miRNA:   3'- aGUU-GGCCgCCGG--------CGCCAa--AGUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.