miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26349 3' -56.7 NC_005345.2 + 29721 0.65 0.660955
Target:  5'- cCCCGGUCGGGGaaGUGggccaagagggCGUCacgGAGCAc -3'
miRNA:   3'- -GGGCUAGUCCC--CACaga--------GCAG---CUCGU- -5'
26349 3' -56.7 NC_005345.2 + 35934 0.66 0.643598
Target:  5'- gCCGGggCGcGGGGUGUgCUCGccgcgCGGGCu -3'
miRNA:   3'- gGGCUa-GU-CCCCACA-GAGCa----GCUCGu -5'
26349 3' -56.7 NC_005345.2 + 9154 0.66 0.632734
Target:  5'- aCCCGAgaCAcGGGcGUGUaggaCUCGgCGAGCGu -3'
miRNA:   3'- -GGGCUa-GU-CCC-CACA----GAGCaGCUCGU- -5'
26349 3' -56.7 NC_005345.2 + 7644 0.67 0.600176
Target:  5'- cUCCGcguUCGGGacGGUGUgccggUCGUCGGGCAc -3'
miRNA:   3'- -GGGCu--AGUCC--CCACAg----AGCAGCUCGU- -5'
26349 3' -56.7 NC_005345.2 + 28177 0.67 0.578589
Target:  5'- aCCUGAggggCucGGGGUGUCUguuccggcaGUUGGGCAg -3'
miRNA:   3'- -GGGCUa---Gu-CCCCACAGAg--------CAGCUCGU- -5'
26349 3' -56.7 NC_005345.2 + 27567 0.67 0.54655
Target:  5'- gCCGuUCGGGGGg--C-CGUCGGGCc -3'
miRNA:   3'- gGGCuAGUCCCCacaGaGCAGCUCGu -5'
26349 3' -56.7 NC_005345.2 + 30263 0.68 0.494541
Target:  5'- gCCGAgCAGGccGGg--CUCGUCGAGCc -3'
miRNA:   3'- gGGCUaGUCC--CCacaGAGCAGCUCGu -5'
26349 3' -56.7 NC_005345.2 + 45220 0.69 0.474367
Target:  5'- gCCCGGUCacGGGGGUGcggUCGUC-AGCc -3'
miRNA:   3'- -GGGCUAG--UCCCCACag-AGCAGcUCGu -5'
26349 3' -56.7 NC_005345.2 + 10675 0.69 0.464435
Target:  5'- gCCGAUCAGGGuGUgcGUCgCGUCGuagaaacGCAg -3'
miRNA:   3'- gGGCUAGUCCC-CA--CAGaGCAGCu------CGU- -5'
26349 3' -56.7 NC_005345.2 + 22751 0.69 0.454613
Target:  5'- cCCCGA-CAGGucgGUCgCGUCGAGCu -3'
miRNA:   3'- -GGGCUaGUCCccaCAGaGCAGCUCGu -5'
26349 3' -56.7 NC_005345.2 + 22392 0.69 0.454613
Target:  5'- aCCCGcgCcGGGGa--CUCGUCGAGUu -3'
miRNA:   3'- -GGGCuaGuCCCCacaGAGCAGCUCGu -5'
26349 3' -56.7 NC_005345.2 + 9866 0.69 0.454613
Target:  5'- -aCGAgCAGGGGcUG-CUCGaCGAGCAg -3'
miRNA:   3'- ggGCUaGUCCCC-ACaGAGCaGCUCGU- -5'
26349 3' -56.7 NC_005345.2 + 18706 0.7 0.407274
Target:  5'- gCCCgGAUCGGGGGUGUgCcCgGUCGGGa- -3'
miRNA:   3'- -GGG-CUAGUCCCCACA-GaG-CAGCUCgu -5'
26349 3' -56.7 NC_005345.2 + 32194 0.71 0.330307
Target:  5'- gCCGAggugccgCAGGc--GUCUCGUCGAGCGg -3'
miRNA:   3'- gGGCUa------GUCCccaCAGAGCAGCUCGU- -5'
26349 3' -56.7 NC_005345.2 + 8620 0.72 0.322446
Target:  5'- cCCCGGUCGGGGGUGagcaGUCGugacuGCu -3'
miRNA:   3'- -GGGCUAGUCCCCACagagCAGCu----CGu -5'
26349 3' -56.7 NC_005345.2 + 23650 0.72 0.296772
Target:  5'- gCCGAgacgCAgcagccagaagucGGGGUugucgaguuccggcGUCUCGUCGAGCAu -3'
miRNA:   3'- gGGCUa---GU-------------CCCCA--------------CAGAGCAGCUCGU- -5'
26349 3' -56.7 NC_005345.2 + 45046 0.73 0.271348
Target:  5'- aCCGcUCGGGGGUGUgCcCGUCGuGCu -3'
miRNA:   3'- gGGCuAGUCCCCACA-GaGCAGCuCGu -5'
26349 3' -56.7 NC_005345.2 + 1525 0.74 0.226966
Target:  5'- -aCGAUCuuGGGUGUCgggcgCGUCGAGCc -3'
miRNA:   3'- ggGCUAGucCCCACAGa----GCAGCUCGu -5'
26349 3' -56.7 NC_005345.2 + 32923 0.77 0.144279
Target:  5'- gUCGAUCAGGGGUagcgcagcugCUUGUCGAGCGc -3'
miRNA:   3'- gGGCUAGUCCCCAca--------GAGCAGCUCGU- -5'
26349 3' -56.7 NC_005345.2 + 9834 1.1 0.00066
Target:  5'- gCCCGAUCAGGGGUGUCUCGUCGAGCAc -3'
miRNA:   3'- -GGGCUAGUCCCCACAGAGCAGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.