miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26349 5' -60.8 NC_005345.2 + 37228 0.66 0.410957
Target:  5'- cGCgUGUcggCGGCGugccGUAGUAGCGGGCg- -3'
miRNA:   3'- -CG-ACGa--GCUGCu---CGUCGUCGCCCGgc -5'
26349 5' -60.8 NC_005345.2 + 40167 0.66 0.410957
Target:  5'- aGCgUGUaCGGCGcGCAGCuGCGGaucgagGCCGg -3'
miRNA:   3'- -CG-ACGaGCUGCuCGUCGuCGCC------CGGC- -5'
26349 5' -60.8 NC_005345.2 + 21801 0.66 0.410957
Target:  5'- aCUGaUUCGAUG-GCGGCGGCcgaGGGuCCGc -3'
miRNA:   3'- cGAC-GAGCUGCuCGUCGUCG---CCC-GGC- -5'
26349 5' -60.8 NC_005345.2 + 19107 0.66 0.410957
Target:  5'- gGCUGaugUgGGCGcucaccgcauGGUGGCuGCGGGCCGc -3'
miRNA:   3'- -CGACg--AgCUGC----------UCGUCGuCGCCCGGC- -5'
26349 5' -60.8 NC_005345.2 + 47012 0.66 0.401926
Target:  5'- gGCUGCaCGGCGAGgccuGCuuucacuGCGGcGCCGu -3'
miRNA:   3'- -CGACGaGCUGCUCgu--CGu------CGCC-CGGC- -5'
26349 5' -60.8 NC_005345.2 + 24625 0.66 0.401926
Target:  5'- uGCUGCaCGAUccGCcGU-GCGGGCCGg -3'
miRNA:   3'- -CGACGaGCUGcuCGuCGuCGCCCGGC- -5'
26349 5' -60.8 NC_005345.2 + 18141 0.66 0.401926
Target:  5'- --aGCUCGGuCG-GCAcGUaggccggaccgGGCGGGCCGa -3'
miRNA:   3'- cgaCGAGCU-GCuCGU-CG-----------UCGCCCGGC- -5'
26349 5' -60.8 NC_005345.2 + 16947 0.66 0.401926
Target:  5'- gGCcGCUCGACGAGaCGccuCGGCaccucGGCCGg -3'
miRNA:   3'- -CGaCGAGCUGCUC-GUc--GUCGc----CCGGC- -5'
26349 5' -60.8 NC_005345.2 + 959 0.66 0.393022
Target:  5'- aGgUGCUCccCGAGCAGgAaccGCGGGUCa -3'
miRNA:   3'- -CgACGAGcuGCUCGUCgU---CGCCCGGc -5'
26349 5' -60.8 NC_005345.2 + 23104 0.66 0.393022
Target:  5'- gGC-GCUCGccgagGCGAGCgaGGCGGCGaGUCGg -3'
miRNA:   3'- -CGaCGAGC-----UGCUCG--UCGUCGCcCGGC- -5'
26349 5' -60.8 NC_005345.2 + 5374 0.66 0.393022
Target:  5'- cGCUGcCUCGgaugacggGCGAGUccacucaggcccGGCGGUcGGCCGa -3'
miRNA:   3'- -CGAC-GAGC--------UGCUCG------------UCGUCGcCCGGC- -5'
26349 5' -60.8 NC_005345.2 + 3364 0.66 0.384247
Target:  5'- cGCgcagugGUUCuACGAGCugGGCGGCGaGGuCCGg -3'
miRNA:   3'- -CGa-----CGAGcUGCUCG--UCGUCGC-CC-GGC- -5'
26349 5' -60.8 NC_005345.2 + 9683 0.66 0.384247
Target:  5'- cGCcGC-CGGCu-GCAGgccgauCAGCGGGCCGc -3'
miRNA:   3'- -CGaCGaGCUGcuCGUC------GUCGCCCGGC- -5'
26349 5' -60.8 NC_005345.2 + 18418 0.66 0.384247
Target:  5'- ---cCUCGACGAcguGCGGCAGCaGGUCc -3'
miRNA:   3'- cgacGAGCUGCU---CGUCGUCGcCCGGc -5'
26349 5' -60.8 NC_005345.2 + 45484 0.66 0.384247
Target:  5'- gGCaUG-UCGGCGaAGguGguGgGGGCCGc -3'
miRNA:   3'- -CG-ACgAGCUGC-UCguCguCgCCCGGC- -5'
26349 5' -60.8 NC_005345.2 + 32622 0.66 0.384247
Target:  5'- cGCaGCagCGGC-AGCGGCAuGCGGaGCCa -3'
miRNA:   3'- -CGaCGa-GCUGcUCGUCGU-CGCC-CGGc -5'
26349 5' -60.8 NC_005345.2 + 39312 0.66 0.379045
Target:  5'- -gUGCUCGACGAgacaccccugaucggGCaucGGCGGCaccGGCCGc -3'
miRNA:   3'- cgACGAGCUGCU---------------CG---UCGUCGc--CCGGC- -5'
26349 5' -60.8 NC_005345.2 + 4326 0.66 0.379045
Target:  5'- cCUGCgucucgacaUCGGcCGAGCcgggguccugccucgGGCgGGCGGGCCGc -3'
miRNA:   3'- cGACG---------AGCU-GCUCG---------------UCG-UCGCCCGGC- -5'
26349 5' -60.8 NC_005345.2 + 3158 0.66 0.375603
Target:  5'- --gGCgUCGGCGAGCucgucgGGguGcCGGGUCGg -3'
miRNA:   3'- cgaCG-AGCUGCUCG------UCguC-GCCCGGC- -5'
26349 5' -60.8 NC_005345.2 + 26996 0.66 0.375603
Target:  5'- cGCUGCUCGccacaGCGucGCGGUAGCGcGaCCa -3'
miRNA:   3'- -CGACGAGC-----UGCu-CGUCGUCGC-CcGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.