Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26355 | 3' | -61 | NC_005345.2 | + | 40263 | 0.69 | 0.224552 |
Target: 5'- cGGGGCGccGGCgggcaugaguccggAGAGCgucaugCCgCGCCCCCg -3' miRNA: 3'- aUCCUGCa-CCG--------------UCUCGa-----GG-GUGGGGG- -5' |
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26355 | 3' | -61 | NC_005345.2 | + | 27480 | 0.7 | 0.220544 |
Target: 5'- gGGGGCGgggGGagGGAGUcaccCCCACCCCg -3' miRNA: 3'- aUCCUGCa--CCg-UCUCGa---GGGUGGGGg -5' |
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26355 | 3' | -61 | NC_005345.2 | + | 2772 | 0.7 | 0.214926 |
Target: 5'- --cGGCGUGGCu--GCUCgCCGCCgCCCu -3' miRNA: 3'- aucCUGCACCGucuCGAG-GGUGG-GGG- -5' |
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26355 | 3' | -61 | NC_005345.2 | + | 21663 | 0.71 | 0.165238 |
Target: 5'- gGGGugG-GGguGA-CUCCCucCCCCCg -3' miRNA: 3'- aUCCugCaCCguCUcGAGGGu-GGGGG- -5' |
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26355 | 3' | -61 | NC_005345.2 | + | 18079 | 0.72 | 0.148424 |
Target: 5'- cUGGGACcggGUGcGCGG-GUUCgCACCCCCg -3' miRNA: 3'- -AUCCUG---CAC-CGUCuCGAGgGUGGGGG- -5' |
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26355 | 3' | -61 | NC_005345.2 | + | 33854 | 0.74 | 0.11024 |
Target: 5'- -cGGGCGacgaguagccgaacGCAaaacGAGCUCCCACCCCCg -3' miRNA: 3'- auCCUGCac------------CGU----CUCGAGGGUGGGGG- -5' |
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26355 | 3' | -61 | NC_005345.2 | + | 15242 | 1.09 | 0.000216 |
Target: 5'- gUAGGACGUGGCAGAGCUCCCACCCCCu -3' miRNA: 3'- -AUCCUGCACCGUCUCGAGGGUGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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