miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26356 5' -66.2 NC_005345.2 + 17741 0.66 0.200605
Target:  5'- cGCCggGUGCgCACuCGCCCUCA-CCCUCa- -3'
miRNA:   3'- -CGG--CGCG-GUG-GCGGGGGUgGGGAGag -5'
26356 5' -66.2 NC_005345.2 + 37548 0.66 0.200605
Target:  5'- cCCGCcaGCgGCCGCCCCaCGCCaCCg--- -3'
miRNA:   3'- cGGCG--CGgUGGCGGGG-GUGG-GGagag -5'
26356 5' -66.2 NC_005345.2 + 26850 0.66 0.200605
Target:  5'- aCCGCGaCACCucgacccacgucGCCCCgGCCgCCUCg- -3'
miRNA:   3'- cGGCGCgGUGG------------CGGGGgUGG-GGAGag -5'
26356 5' -66.2 NC_005345.2 + 3435 0.67 0.195629
Target:  5'- cGCUGCGCaCGCaGaCCCCCGCCCg---- -3'
miRNA:   3'- -CGGCGCG-GUGgC-GGGGGUGGGgagag -5'
26356 5' -66.2 NC_005345.2 + 47099 0.67 0.195629
Target:  5'- cGCCGCgGCCcgccggGCCGCgCCgGgCCCgCUCg -3'
miRNA:   3'- -CGGCG-CGG------UGGCGgGGgUgGGGaGAG- -5'
26356 5' -66.2 NC_005345.2 + 43576 0.67 0.190761
Target:  5'- cGCCuCGCCAacugacCCGCCuCCCACCCg---- -3'
miRNA:   3'- -CGGcGCGGU------GGCGG-GGGUGGGgagag -5'
26356 5' -66.2 NC_005345.2 + 18130 0.67 0.186
Target:  5'- cGCCgGCGCCGUCGUCCCgAUCCC-Cg- -3'
miRNA:   3'- -CGG-CGCGGUGGCGGGGgUGGGGaGag -5'
26356 5' -66.2 NC_005345.2 + 14745 0.67 0.186
Target:  5'- uCCGCGgCGCCGCCCacCUugCCCa--- -3'
miRNA:   3'- cGGCGCgGUGGCGGG--GGugGGGagag -5'
26356 5' -66.2 NC_005345.2 + 45766 0.67 0.181344
Target:  5'- uGCCGCGCCGgaccUCGCCgCCCAgCUCg--- -3'
miRNA:   3'- -CGGCGCGGU----GGCGG-GGGUgGGGagag -5'
26356 5' -66.2 NC_005345.2 + 12907 0.67 0.172341
Target:  5'- cGCCGCGaCgGCCGCCUac-UCCCUCg- -3'
miRNA:   3'- -CGGCGC-GgUGGCGGGgguGGGGAGag -5'
26356 5' -66.2 NC_005345.2 + 14635 0.67 0.167991
Target:  5'- gGCCGCGgC-CCGCCUCgACCgCgucCUCg -3'
miRNA:   3'- -CGGCGCgGuGGCGGGGgUGGgGa--GAG- -5'
26356 5' -66.2 NC_005345.2 + 47270 0.68 0.163739
Target:  5'- cGCCuGCGCggaagACCGCgguauCCCCACCCUUuaCUCg -3'
miRNA:   3'- -CGG-CGCGg----UGGCG-----GGGGUGGGGA--GAG- -5'
26356 5' -66.2 NC_005345.2 + 25557 0.68 0.163739
Target:  5'- cGUCGCGCCgaacGCCGCgaCCCGCagCCgcagCUCg -3'
miRNA:   3'- -CGGCGCGG----UGGCGg-GGGUGg-GGa---GAG- -5'
26356 5' -66.2 NC_005345.2 + 19466 0.68 0.162482
Target:  5'- cCCGCGacgguagaCGCUGCCugaccugcgguucuCCCGCCCCgUCUCc -3'
miRNA:   3'- cGGCGCg-------GUGGCGG--------------GGGUGGGG-AGAG- -5'
26356 5' -66.2 NC_005345.2 + 44906 0.68 0.159584
Target:  5'- cGCCGgcaGCCcgaGCCGUgagcaCCCCGCCCCcCUUc -3'
miRNA:   3'- -CGGCg--CGG---UGGCG-----GGGGUGGGGaGAG- -5'
26356 5' -66.2 NC_005345.2 + 13323 0.68 0.157137
Target:  5'- cGCCGCGCCcUCGCCCgacagaagaagggaCACCgCUCa- -3'
miRNA:   3'- -CGGCGCGGuGGCGGGg-------------GUGGgGAGag -5'
26356 5' -66.2 NC_005345.2 + 4008 0.68 0.155525
Target:  5'- aGCCGCaGCgCGuCCGCguugUCCCGCCCCUgUg -3'
miRNA:   3'- -CGGCG-CG-GU-GGCG----GGGGUGGGGAgAg -5'
26356 5' -66.2 NC_005345.2 + 17019 0.68 0.155525
Target:  5'- uGCCGCcgagGCgAUCGCCCUCGCaCCCgcgCUg -3'
miRNA:   3'- -CGGCG----CGgUGGCGGGGGUG-GGGa--GAg -5'
26356 5' -66.2 NC_005345.2 + 46611 0.68 0.155525
Target:  5'- cGCCGuCGCCACCGCguggaaaccCCCCACgUCg--- -3'
miRNA:   3'- -CGGC-GCGGUGGCG---------GGGGUGgGGagag -5'
26356 5' -66.2 NC_005345.2 + 13374 0.68 0.151559
Target:  5'- uCCGaGCCACCGaacccaccgCCCCGCCCCgccggUUCg -3'
miRNA:   3'- cGGCgCGGUGGCg--------GGGGUGGGGa----GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.