miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26357 3' -58.6 NC_005345.2 + 13409 0.66 0.534952
Target:  5'- -uUCGUC-CUGCgCCGCA-CCgUCGACGu -3'
miRNA:   3'- cuAGCAGcGGCG-GGCGUaGG-AGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 43552 0.66 0.534952
Target:  5'- -cUCGUCGCCgacaaGCUCGCcgaccgCCUCGcCAa -3'
miRNA:   3'- cuAGCAGCGG-----CGGGCGua----GGAGCuGU- -5'
26357 3' -58.6 NC_005345.2 + 39014 0.66 0.52451
Target:  5'- aGAgCGgcCGCCGCCUGUA-CCUCGGgGa -3'
miRNA:   3'- -CUaGCa-GCGGCGGGCGUaGGAGCUgU- -5'
26357 3' -58.6 NC_005345.2 + 21272 0.66 0.52451
Target:  5'- uGUCGUCGCCGucguCCC-CGUCgUCGGgGg -3'
miRNA:   3'- cUAGCAGCGGC----GGGcGUAGgAGCUgU- -5'
26357 3' -58.6 NC_005345.2 + 10090 0.66 0.52451
Target:  5'- -cUCGaUCGCCGCCUGCGUagcgCCcacCGGCc -3'
miRNA:   3'- cuAGC-AGCGGCGGGCGUA----GGa--GCUGu -5'
26357 3' -58.6 NC_005345.2 + 35042 0.66 0.514146
Target:  5'- cGAUCc-UGUCGCCgGUGUUCUCGGCGa -3'
miRNA:   3'- -CUAGcaGCGGCGGgCGUAGGAGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 18922 0.66 0.514146
Target:  5'- uGUCcUCGCgGCUCGCGUCggcgUCGACGu -3'
miRNA:   3'- cUAGcAGCGgCGGGCGUAGg---AGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 34296 0.66 0.514146
Target:  5'- --gCGUCGagCGCCCGCugcagCC-CGGCAa -3'
miRNA:   3'- cuaGCAGCg-GCGGGCGua---GGaGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 28425 0.66 0.507967
Target:  5'- gGAUCgGUCGCCGagggCCGCGagauguaccgcgagcUgCUCGGCAa -3'
miRNA:   3'- -CUAG-CAGCGGCg---GGCGU---------------AgGAGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 26269 0.66 0.507967
Target:  5'- -cUCGUCGaCgaccaggacgaacggCGCCCGCucGUCgUCGACAc -3'
miRNA:   3'- cuAGCAGC-G---------------GCGGGCG--UAGgAGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 43032 0.66 0.503866
Target:  5'- cGUCGUCGgCGgCCGCAccuacgcgcggcUCgUCGAUAc -3'
miRNA:   3'- cUAGCAGCgGCgGGCGU------------AGgAGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 22297 0.66 0.503866
Target:  5'- uGUCGggcaCGuuGCCCGCG--CUCGGCGc -3'
miRNA:   3'- cUAGCa---GCggCGGGCGUagGAGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 30290 0.66 0.503866
Target:  5'- uGUCGaUCGCgGCCCGCAccUgCUCGcCu -3'
miRNA:   3'- cUAGC-AGCGgCGGGCGU--AgGAGCuGu -5'
26357 3' -58.6 NC_005345.2 + 35610 0.66 0.503866
Target:  5'- uGGUCGacggacaGCUGCCCGCgGUCCcagaacacgaUCGACGg -3'
miRNA:   3'- -CUAGCag-----CGGCGGGCG-UAGG----------AGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 44900 0.66 0.503866
Target:  5'- --aCGUgGCCucGCCCGC-UCCgcagCGGCGa -3'
miRNA:   3'- cuaGCAgCGG--CGGGCGuAGGa---GCUGU- -5'
26357 3' -58.6 NC_005345.2 + 20100 0.66 0.503866
Target:  5'- --cCGcCGCCGCCaCGCAgaaaCUCGAa- -3'
miRNA:   3'- cuaGCaGCGGCGG-GCGUag--GAGCUgu -5'
26357 3' -58.6 NC_005345.2 + 29352 0.66 0.503866
Target:  5'- -cUCGUCGCCGUCgGCGUagCCgagccaCGGCu -3'
miRNA:   3'- cuAGCAGCGGCGGgCGUA--GGa-----GCUGu -5'
26357 3' -58.6 NC_005345.2 + 26787 0.66 0.503866
Target:  5'- gGAUCGUgGCCgGCgCCGCGUCgcaGGCGc -3'
miRNA:   3'- -CUAGCAgCGG-CG-GGCGUAGgagCUGU- -5'
26357 3' -58.6 NC_005345.2 + 7974 0.66 0.502843
Target:  5'- cGGUCGUCgugucguGCCGUCCGCGUUgaCGGu- -3'
miRNA:   3'- -CUAGCAG-------CGGCGGGCGUAGgaGCUgu -5'
26357 3' -58.6 NC_005345.2 + 20303 0.66 0.493677
Target:  5'- --aCGUCGgucuuaCCGgCCGCGUCCaCGGCGa -3'
miRNA:   3'- cuaGCAGC------GGCgGGCGUAGGaGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.