miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26357 3' -58.6 NC_005345.2 + 245 0.69 0.321523
Target:  5'- -cUCGggagccaUCGCCGCCCGCAcCUUCGcCGc -3'
miRNA:   3'- cuAGC-------AGCGGCGGGCGUaGGAGCuGU- -5'
26357 3' -58.6 NC_005345.2 + 584 0.75 0.144628
Target:  5'- -cUCaUCGgCGCCCGCAUCCgCGACGc -3'
miRNA:   3'- cuAGcAGCgGCGGGCGUAGGaGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 739 0.66 0.483582
Target:  5'- cGUCGacgUGCCGCUCGCGgUgCUCGugGg -3'
miRNA:   3'- cUAGCa--GCGGCGGGCGU-AgGAGCugU- -5'
26357 3' -58.6 NC_005345.2 + 3309 0.7 0.314608
Target:  5'- cGAUCGUCGcCCGCgCCGCcgCCgu-GCAc -3'
miRNA:   3'- -CUAGCAGC-GGCG-GGCGuaGGagcUGU- -5'
26357 3' -58.6 NC_005345.2 + 4644 0.66 0.483582
Target:  5'- --cCGggcCGUCGCCUGCugugCCUCGGCc -3'
miRNA:   3'- cuaGCa--GCGGCGGGCGua--GGAGCUGu -5'
26357 3' -58.6 NC_005345.2 + 4701 0.67 0.443292
Target:  5'- cGAUCG-CGCCGCaguacacCCGCAUUC-CGAUc -3'
miRNA:   3'- -CUAGCaGCGGCG-------GGCGUAGGaGCUGu -5'
26357 3' -58.6 NC_005345.2 + 5169 0.69 0.354454
Target:  5'- -cUCGUCGCCGCCCucgaaggcucGCccgagGUCCgcccCGGCAc -3'
miRNA:   3'- cuAGCAGCGGCGGG----------CG-----UAGGa---GCUGU- -5'
26357 3' -58.6 NC_005345.2 + 6910 0.69 0.322299
Target:  5'- --aCGUUcCCGCCCGUGUcgaCCUCGGCGc -3'
miRNA:   3'- cuaGCAGcGGCGGGCGUA---GGAGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 7273 0.72 0.233066
Target:  5'- --gCGUCGCCGCCCGCGcgaucgCCgaggCGAa- -3'
miRNA:   3'- cuaGCAGCGGCGGGCGUa-----GGa---GCUgu -5'
26357 3' -58.6 NC_005345.2 + 7753 0.71 0.258077
Target:  5'- -cUCGUCGCCGUUCaGCGUguaCUCGGCGu -3'
miRNA:   3'- cuAGCAGCGGCGGG-CGUAg--GAGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 7974 0.66 0.502843
Target:  5'- cGGUCGUCgugucguGCCGUCCGCGUUgaCGGu- -3'
miRNA:   3'- -CUAGCAG-------CGGCGGGCGUAGgaGCUgu -5'
26357 3' -58.6 NC_005345.2 + 8814 0.66 0.492663
Target:  5'- --cCGUCGcCCGCCacggcgcggugaaCGCGUCgUCGAUg -3'
miRNA:   3'- cuaGCAGC-GGCGG-------------GCGUAGgAGCUGu -5'
26357 3' -58.6 NC_005345.2 + 10090 0.66 0.52451
Target:  5'- -cUCGaUCGCCGCCUGCGUagcgCCcacCGGCc -3'
miRNA:   3'- cuAGC-AGCGGCGGGCGUA----GGa--GCUGu -5'
26357 3' -58.6 NC_005345.2 + 11379 0.71 0.267335
Target:  5'- cGGUCG-CgGCCGCCUGCGggcgagcagcucgaCCUCGACGa -3'
miRNA:   3'- -CUAGCaG-CGGCGGGCGUa-------------GGAGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 12101 0.72 0.215672
Target:  5'- --aCGUCGCCGCCgGCcggAUCC-CGGCu -3'
miRNA:   3'- cuaGCAGCGGCGGgCG---UAGGaGCUGu -5'
26357 3' -58.6 NC_005345.2 + 13409 0.66 0.534952
Target:  5'- -uUCGUC-CUGCgCCGCA-CCgUCGACGu -3'
miRNA:   3'- cuAGCAGcGGCG-GGCGUaGG-AGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 14631 0.74 0.170053
Target:  5'- --gCGagGCCGCggcccgccucgaCCGCGUCCUCGGCAc -3'
miRNA:   3'- cuaGCagCGGCG------------GGCGUAGGAGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 15212 0.69 0.338099
Target:  5'- aGGUCGaaCGCCuGCuUCGCGUCCUUGACc -3'
miRNA:   3'- -CUAGCa-GCGG-CG-GGCGUAGGAGCUGu -5'
26357 3' -58.6 NC_005345.2 + 15861 1.08 0.000549
Target:  5'- uGAUCGUCGCCGCCCGCAUCCUCGACAu -3'
miRNA:   3'- -CUAGCAGCGGCGGGCGUAGGAGCUGU- -5'
26357 3' -58.6 NC_005345.2 + 15971 0.68 0.388807
Target:  5'- cGAUCGUCGCCgaggucGUCCGUA-CCUCuGugGg -3'
miRNA:   3'- -CUAGCAGCGG------CGGGCGUaGGAG-CugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.