miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26357 5' -57.5 NC_005345.2 + 1094 0.66 0.570221
Target:  5'- cGGCGaCGAGCgGUGCgCgCCG-GACGAg -3'
miRNA:   3'- -CCGUgGCUCGaCAUG-G-GGCaCUGCUa -5'
26357 5' -57.5 NC_005345.2 + 26705 0.66 0.570221
Target:  5'- aGGCGgCGuGGCaUGUcgccgaacguccGCCCCGUGACa-- -3'
miRNA:   3'- -CCGUgGC-UCG-ACA------------UGGGGCACUGcua -5'
26357 5' -57.5 NC_005345.2 + 19390 0.66 0.570221
Target:  5'- cGGCGgCGuGCccacccgcgggGUGCUCCGUGACGc- -3'
miRNA:   3'- -CCGUgGCuCGa----------CAUGGGGCACUGCua -5'
26357 5' -57.5 NC_005345.2 + 6564 0.66 0.548741
Target:  5'- uGGCuACgCGGGCgga--CCCGUGACGGg -3'
miRNA:   3'- -CCG-UG-GCUCGacaugGGGCACUGCUa -5'
26357 5' -57.5 NC_005345.2 + 10843 0.66 0.548741
Target:  5'- cGGCGCCGAGCUGcggugggcggacUGCCgCaCGcGGCGc- -3'
miRNA:   3'- -CCGUGGCUCGAC------------AUGG-G-GCaCUGCua -5'
26357 5' -57.5 NC_005345.2 + 47040 0.66 0.548741
Target:  5'- cGGCGCCGucucgacgacGCUG-ACCCCGgccggGACa-- -3'
miRNA:   3'- -CCGUGGCu---------CGACaUGGGGCa----CUGcua -5'
26357 5' -57.5 NC_005345.2 + 21372 0.66 0.547673
Target:  5'- uGGUacACCGAGCUGcGCCCguucguccugcagCGcGACGAg -3'
miRNA:   3'- -CCG--UGGCUCGACaUGGG-------------GCaCUGCUa -5'
26357 5' -57.5 NC_005345.2 + 9444 0.66 0.538095
Target:  5'- uGGC-CCGAGCUcg-UCCCG-GGCGGUg -3'
miRNA:   3'- -CCGuGGCUCGAcauGGGGCaCUGCUA- -5'
26357 5' -57.5 NC_005345.2 + 23920 0.66 0.52752
Target:  5'- cGGUucuaCGAGCUGcACCCgGUGACc-- -3'
miRNA:   3'- -CCGug--GCUCGACaUGGGgCACUGcua -5'
26357 5' -57.5 NC_005345.2 + 13193 0.66 0.52752
Target:  5'- cGGC-CCGAGCggcaGCCCgCGcGGCGAg -3'
miRNA:   3'- -CCGuGGCUCGaca-UGGG-GCaCUGCUa -5'
26357 5' -57.5 NC_005345.2 + 33291 0.66 0.52752
Target:  5'- aGCGCCGAGCUGcucGCCCacc-GCGAg -3'
miRNA:   3'- cCGUGGCUCGACa--UGGGgcacUGCUa -5'
26357 5' -57.5 NC_005345.2 + 3917 0.66 0.52752
Target:  5'- uGCGCCGuGGCUGacgaccgcacCCCCGUGAcCGGg -3'
miRNA:   3'- cCGUGGC-UCGACau--------GGGGCACU-GCUa -5'
26357 5' -57.5 NC_005345.2 + 26848 0.66 0.52752
Target:  5'- cGCGCCGAGCgcgggcaacGUGCCCgacaGcGGCGGUg -3'
miRNA:   3'- cCGUGGCUCGa--------CAUGGGg---CaCUGCUA- -5'
26357 5' -57.5 NC_005345.2 + 46618 0.66 0.526467
Target:  5'- cGGCGCCGGGU---GCCCCGUcgccguuGACa-- -3'
miRNA:   3'- -CCGUGGCUCGacaUGGGGCA-------CUGcua -5'
26357 5' -57.5 NC_005345.2 + 21258 0.67 0.517024
Target:  5'- cGuCGCCGAGCUGUACgucgaaCCCGgccgggaccucGACGAg -3'
miRNA:   3'- cC-GUGGCUCGACAUG------GGGCa----------CUGCUa -5'
26357 5' -57.5 NC_005345.2 + 11228 0.67 0.496291
Target:  5'- aGGCGuCCGcgaacgcGCUGUACUcgacuccggCCGUGACGGg -3'
miRNA:   3'- -CCGU-GGCu------CGACAUGG---------GGCACUGCUa -5'
26357 5' -57.5 NC_005345.2 + 27169 0.67 0.490144
Target:  5'- cGGC-CCGAGCaGUACCgggcaucggcgcgggCCGUGAuCGGc -3'
miRNA:   3'- -CCGuGGCUCGaCAUGG---------------GGCACU-GCUa -5'
26357 5' -57.5 NC_005345.2 + 35391 0.67 0.475942
Target:  5'- cGCACCGAGCUcgaucaGUGCCUCGaUGuCGu- -3'
miRNA:   3'- cCGUGGCUCGA------CAUGGGGC-ACuGCua -5'
26357 5' -57.5 NC_005345.2 + 22044 0.68 0.446223
Target:  5'- uGGCGCCGAGCaUGUcgGCCa--UGACGGc -3'
miRNA:   3'- -CCGUGGCUCG-ACA--UGGggcACUGCUa -5'
26357 5' -57.5 NC_005345.2 + 26610 0.68 0.417568
Target:  5'- cGCGCCauGGCUGUACcuCCCGUGuCGGg -3'
miRNA:   3'- cCGUGGc-UCGACAUG--GGGCACuGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.