miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26358 3' -58 NC_005345.2 + 21306 0.67 0.478051
Target:  5'- --cGAGCgACGCcGCCCGUGAgCGgCGg -3'
miRNA:   3'- cgaCUCG-UGCGaCGGGCGCUaGCaGC- -5'
26358 3' -58 NC_005345.2 + 17035 0.68 0.448506
Target:  5'- --cGAGCACGCcGCCCcacGCGuagaaGUCGg -3'
miRNA:   3'- cgaCUCGUGCGaCGGG---CGCuag--CAGC- -5'
26358 3' -58 NC_005345.2 + 15476 0.68 0.448506
Target:  5'- gGCUGAcGC-CGUgcucggugcagaUGUCgGCGAUCGUCa -3'
miRNA:   3'- -CGACU-CGuGCG------------ACGGgCGCUAGCAGc -5'
26358 3' -58 NC_005345.2 + 860 0.68 0.448506
Target:  5'- aCUGAcgaucaGCGCGCacUGCgCGCGGUCGggCGg -3'
miRNA:   3'- cGACU------CGUGCG--ACGgGCGCUAGCa-GC- -5'
26358 3' -58 NC_005345.2 + 43836 0.68 0.429381
Target:  5'- gGCUGAuCACGUacUGCCCGguCGAcggggCGUCGg -3'
miRNA:   3'- -CGACUcGUGCG--ACGGGC--GCUa----GCAGC- -5'
26358 3' -58 NC_005345.2 + 32902 0.68 0.42
Target:  5'- gGCUGGGgGCGCUGCggGCcGGUCGaUCa -3'
miRNA:   3'- -CGACUCgUGCGACGggCG-CUAGC-AGc -5'
26358 3' -58 NC_005345.2 + 27614 0.68 0.398903
Target:  5'- cGC-GAGCAcggcgagaucggucCGCUGCUCGCGGUCcGcCGa -3'
miRNA:   3'- -CGaCUCGU--------------GCGACGGGCGCUAG-CaGC- -5'
26358 3' -58 NC_005345.2 + 12576 0.69 0.383753
Target:  5'- aCUGucCucuuCGCUGUugcggCCGCGAUCGUCGg -3'
miRNA:   3'- cGACucGu---GCGACG-----GGCGCUAGCAGC- -5'
26358 3' -58 NC_005345.2 + 17008 0.69 0.366424
Target:  5'- uUUGAGCGgGCUGCCgccgagGCGAUCGcccUCGc -3'
miRNA:   3'- cGACUCGUgCGACGGg-----CGCUAGC---AGC- -5'
26358 3' -58 NC_005345.2 + 5679 0.69 0.357964
Target:  5'- aGCcGAcCGCGCUGCgCCGCGAacUCGcCGc -3'
miRNA:   3'- -CGaCUcGUGCGACG-GGCGCU--AGCaGC- -5'
26358 3' -58 NC_005345.2 + 41891 0.69 0.357964
Target:  5'- gGCUgucGAGCA-GCUGCUCGUcgucgccuGGUCGUCGc -3'
miRNA:   3'- -CGA---CUCGUgCGACGGGCG--------CUAGCAGC- -5'
26358 3' -58 NC_005345.2 + 21038 0.7 0.349642
Target:  5'- cCUcGGCACGCgcGCCgGCGAccgccUCGUCGa -3'
miRNA:   3'- cGAcUCGUGCGa-CGGgCGCU-----AGCAGC- -5'
26358 3' -58 NC_005345.2 + 7515 0.7 0.333414
Target:  5'- cGgUGGGCGUGCUGCCggcgGCGGUCGUgGu -3'
miRNA:   3'- -CgACUCGUGCGACGGg---CGCUAGCAgC- -5'
26358 3' -58 NC_005345.2 + 7140 0.7 0.317746
Target:  5'- gGCgGGGCACGUgGCCCGgGAcggGUCGg -3'
miRNA:   3'- -CGaCUCGUGCGaCGGGCgCUag-CAGC- -5'
26358 3' -58 NC_005345.2 + 19856 0.71 0.302637
Target:  5'- --cGAGCGCGCUGCCUcggGCGAccUCGa-- -3'
miRNA:   3'- cgaCUCGUGCGACGGG---CGCU--AGCagc -5'
26358 3' -58 NC_005345.2 + 39768 0.71 0.302637
Target:  5'- gGCUGAacaGCG-GCUGCCCGUaGUgGUCGa -3'
miRNA:   3'- -CGACU---CGUgCGACGGGCGcUAgCAGC- -5'
26358 3' -58 NC_005345.2 + 35470 0.72 0.254134
Target:  5'- --aGGGCGaGCUGCCCGaCGG-CGUCGa -3'
miRNA:   3'- cgaCUCGUgCGACGGGC-GCUaGCAGC- -5'
26358 3' -58 NC_005345.2 + 28021 0.72 0.235382
Target:  5'- uGCgGAGCGCGCagGCCuCGaCG-UCGUCGa -3'
miRNA:   3'- -CGaCUCGUGCGa-CGG-GC-GCuAGCAGC- -5'
26358 3' -58 NC_005345.2 + 4134 0.75 0.162713
Target:  5'- --cGAGCG-GCUGCUCGCGGcgcUCGUCGa -3'
miRNA:   3'- cgaCUCGUgCGACGGGCGCU---AGCAGC- -5'
26358 3' -58 NC_005345.2 + 46234 0.75 0.15838
Target:  5'- cGUUGGGC-CGCUGCCCGguccgcCGAuccgcUCGUCGa -3'
miRNA:   3'- -CGACUCGuGCGACGGGC------GCU-----AGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.