miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26358 5' -57.3 NC_005345.2 + 35594 0.66 0.591901
Target:  5'- gCCGUGCCcguggaUGUGGuCGACGgacaGCUGc -3'
miRNA:   3'- aGGCAUGGag----ACACCcGCUGCa---CGAC- -5'
26358 5' -57.3 NC_005345.2 + 19097 0.66 0.58104
Target:  5'- gCCGUGCCguggcugaUGUGGGCGcucaccgcAUGgugGCUGc -3'
miRNA:   3'- aGGCAUGGag------ACACCCGC--------UGCa--CGAC- -5'
26358 5' -57.3 NC_005345.2 + 34421 0.66 0.58104
Target:  5'- gCCGcggACCg--GaUGGGCGACGcGCUGc -3'
miRNA:   3'- aGGCa--UGGagaC-ACCCGCUGCaCGAC- -5'
26358 5' -57.3 NC_005345.2 + 5924 0.67 0.538094
Target:  5'- gCCGggACCggugacCUGUGGGUGugGcUGCg- -3'
miRNA:   3'- aGGCa-UGGa-----GACACCCGCugC-ACGac -5'
26358 5' -57.3 NC_005345.2 + 10592 0.67 0.538094
Target:  5'- gCCGUGCCg--GUGGGCG-CGUacGCc- -3'
miRNA:   3'- aGGCAUGGagaCACCCGCuGCA--CGac -5'
26358 5' -57.3 NC_005345.2 + 37216 0.67 0.52752
Target:  5'- gCCGUucgcCCUCgcgUGUcGGCGGCGUGCc- -3'
miRNA:   3'- aGGCAu---GGAG---ACAcCCGCUGCACGac -5'
26358 5' -57.3 NC_005345.2 + 20411 0.7 0.36377
Target:  5'- gCCGUACCUCccgccGUGGGCGcCGUacCUGc -3'
miRNA:   3'- aGGCAUGGAGa----CACCCGCuGCAc-GAC- -5'
26358 5' -57.3 NC_005345.2 + 42680 0.7 0.355282
Target:  5'- cCCGUGCCUgacCUGUGGaugccgggcGCGACccgGCUGg -3'
miRNA:   3'- aGGCAUGGA---GACACC---------CGCUGca-CGAC- -5'
26358 5' -57.3 NC_005345.2 + 14698 0.7 0.346935
Target:  5'- gCCGUGCC-CgugGUGuGGCGGCGagcucgUGCUGc -3'
miRNA:   3'- aGGCAUGGaGa--CAC-CCGCUGC------ACGAC- -5'
26358 5' -57.3 NC_005345.2 + 18430 0.71 0.292483
Target:  5'- gCCGUGaUUCUGUGGGCGAaccugcgccCGUGgUGg -3'
miRNA:   3'- aGGCAUgGAGACACCCGCU---------GCACgAC- -5'
26358 5' -57.3 NC_005345.2 + 32107 0.71 0.285273
Target:  5'- aCCG-ACUUCUacgcGUgGGGCGGCGUGCUc -3'
miRNA:   3'- aGGCaUGGAGA----CA-CCCGCUGCACGAc -5'
26358 5' -57.3 NC_005345.2 + 15988 1.08 0.000691
Target:  5'- gUCCGUACCUCUGUGGGCGACGUGCUGc -3'
miRNA:   3'- -AGGCAUGGAGACACCCGCUGCACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.