miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2636 5' -56.9 NC_001491.2 + 9996 0.66 0.843301
Target:  5'- cGGGGGCGGGCGcGGAcgGGCuauacccgacCAGCa-- -3'
miRNA:   3'- -UUUCCGUCCGC-UCUuaCCG----------GUCGcag -5'
2636 5' -56.9 NC_001491.2 + 46043 0.66 0.817755
Target:  5'- --uGGC-GGUGAGAGcGGCCAuGCGcCu -3'
miRNA:   3'- uuuCCGuCCGCUCUUaCCGGU-CGCaG- -5'
2636 5' -56.9 NC_001491.2 + 21902 0.67 0.762186
Target:  5'- --cGGCAcGCGGGugugGGCUGGCGUUg -3'
miRNA:   3'- uuuCCGUcCGCUCuua-CCGGUCGCAG- -5'
2636 5' -56.9 NC_001491.2 + 39005 0.67 0.752451
Target:  5'- aGAGGGCgcagacGGGgGAGAA-GGCCGGCu-- -3'
miRNA:   3'- -UUUCCG------UCCgCUCUUaCCGGUCGcag -5'
2636 5' -56.9 NC_001491.2 + 96995 0.68 0.742605
Target:  5'- --cGG-AGGCGGGAAgc-CCGGCGUCg -3'
miRNA:   3'- uuuCCgUCCGCUCUUaccGGUCGCAG- -5'
2636 5' -56.9 NC_001491.2 + 89031 0.68 0.712507
Target:  5'- --uGGCGGcuGCGcaaAGuuGUGGCCAGCGUUg -3'
miRNA:   3'- uuuCCGUC--CGC---UCu-UACCGGUCGCAG- -5'
2636 5' -56.9 NC_001491.2 + 1056 0.69 0.68177
Target:  5'- aGAGGGCgGGGCGGGGu---UCAGCGUCa -3'
miRNA:   3'- -UUUCCG-UCCGCUCUuaccGGUCGCAG- -5'
2636 5' -56.9 NC_001491.2 + 110697 0.69 0.668318
Target:  5'- -cGGGCGgcgcuaauuucGGCGGcacgcugucgcgccGAGuUGGCCAGCGUCu -3'
miRNA:   3'- uuUCCGU-----------CCGCU--------------CUU-ACCGGUCGCAG- -5'
2636 5' -56.9 NC_001491.2 + 3552 0.7 0.608983
Target:  5'- gGAGGGCAGGCGGGAGaggggaucUcGCUGGgGUCc -3'
miRNA:   3'- -UUUCCGUCCGCUCUU--------AcCGGUCgCAG- -5'
2636 5' -56.9 NC_001491.2 + 43090 0.7 0.597552
Target:  5'- ---aGUGGGUGGGggUGGCCAGUagaggugGUCa -3'
miRNA:   3'- uuucCGUCCGCUCuuACCGGUCG-------CAG- -5'
2636 5' -56.9 NC_001491.2 + 74707 0.71 0.567596
Target:  5'- -uGGGauucGGCGAGucgcGUGGCCAGCGg- -3'
miRNA:   3'- uuUCCgu--CCGCUCu---UACCGGUCGCag -5'
2636 5' -56.9 NC_001491.2 + 5721 0.71 0.547157
Target:  5'- gGAAGGUuGGCGGG--UGGCCGGUGg- -3'
miRNA:   3'- -UUUCCGuCCGCUCuuACCGGUCGCag -5'
2636 5' -56.9 NC_001491.2 + 12490 0.72 0.504081
Target:  5'- --cGGCGGGCGcccgcggguccccgGGGcgGGgCGGCGUCg -3'
miRNA:   3'- uuuCCGUCCGC--------------UCUuaCCgGUCGCAG- -5'
2636 5' -56.9 NC_001491.2 + 137957 1.08 0.002122
Target:  5'- aAAAGGCAGGCGAGAAUGGCCAGCGUCa -3'
miRNA:   3'- -UUUCCGUCCGCUCUUACCGGUCGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.