miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26361 3' -63.4 NC_005345.2 + 10632 0.66 0.30753
Target:  5'- aCGGGCCCac-CCCGGGGCuCGccauggucGCCCGg -3'
miRNA:   3'- -GCUUGGGcucGGGCUCCG-GCu-------CGGGC- -5'
26361 3' -63.4 NC_005345.2 + 34008 0.66 0.306809
Target:  5'- uGAACCC--GCCCGAcccgcaggacgggGGCCGGaccGUCCGg -3'
miRNA:   3'- gCUUGGGcuCGGGCU-------------CCGGCU---CGGGC- -5'
26361 3' -63.4 NC_005345.2 + 37402 0.66 0.300384
Target:  5'- ----aCCGAGCCCGAcgaaGGCggCGAGCCg- -3'
miRNA:   3'- gcuugGGCUCGGGCU----CCG--GCUCGGgc -5'
26361 3' -63.4 NC_005345.2 + 29985 0.67 0.293368
Target:  5'- aCGGGCagccguaCGGGCCCGGcgacgacgucccGGCCGAGgUCGc -3'
miRNA:   3'- -GCUUGg------GCUCGGGCU------------CCGGCUCgGGC- -5'
26361 3' -63.4 NC_005345.2 + 14984 0.67 0.293368
Target:  5'- gGGGcCCCGGGCCacuccuCGGGGCCGccGCCgCGc -3'
miRNA:   3'- gCUU-GGGCUCGG------GCUCCGGCu-CGG-GC- -5'
26361 3' -63.4 NC_005345.2 + 4289 0.67 0.28922
Target:  5'- uCGGGCUCGGGCugcgguucgacccauCCGAGGUCGA-CCUGc -3'
miRNA:   3'- -GCUUGGGCUCG---------------GGCUCCGGCUcGGGC- -5'
26361 3' -63.4 NC_005345.2 + 14549 0.67 0.28648
Target:  5'- uGGcUCCucGCCCGGuacGGCaCGGGCCCGg -3'
miRNA:   3'- gCUuGGGcuCGGGCU---CCG-GCUCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 14718 0.67 0.28648
Target:  5'- gCGAGCUCGuGCugcacaCCGAGGCCG-GCaCGg -3'
miRNA:   3'- -GCUUGGGCuCG------GGCUCCGGCuCGgGC- -5'
26361 3' -63.4 NC_005345.2 + 18493 0.67 0.28648
Target:  5'- cCGGguACCCGGG-UCGAGGUCGAGCg-- -3'
miRNA:   3'- -GCU--UGGGCUCgGGCUCCGGCUCGggc -5'
26361 3' -63.4 NC_005345.2 + 14605 0.67 0.279721
Target:  5'- gCGGcUCCGGaucgacggguacGCCCgcGAGGCCGcGGCCCGc -3'
miRNA:   3'- -GCUuGGGCU------------CGGG--CUCCGGC-UCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 9617 0.67 0.279721
Target:  5'- cCGGugCaCGAccuGCUCGAucGGCCGGGUCCa -3'
miRNA:   3'- -GCUugG-GCU---CGGGCU--CCGGCUCGGGc -5'
26361 3' -63.4 NC_005345.2 + 26488 0.67 0.273089
Target:  5'- gCGAcuGCCCGAccGUCCGcAGGUCGAcCCCu -3'
miRNA:   3'- -GCU--UGGGCU--CGGGC-UCCGGCUcGGGc -5'
26361 3' -63.4 NC_005345.2 + 25169 0.67 0.272433
Target:  5'- gCGAcuuGCCCcAGCCuCGcGGCCGcgacagcAGCCCGc -3'
miRNA:   3'- -GCU---UGGGcUCGG-GCuCCGGC-------UCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 9956 0.67 0.266583
Target:  5'- -cAACCCGcGGCCCGgguucGGGCUgGGGUCCGc -3'
miRNA:   3'- gcUUGGGC-UCGGGC-----UCCGG-CUCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 24192 0.67 0.266583
Target:  5'- -cGACCgGccGCCCGucgGGGCCGAGUUCGa -3'
miRNA:   3'- gcUUGGgCu-CGGGC---UCCGGCUCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 27958 0.67 0.266583
Target:  5'- aCGAcaaGCCCGA-CCaCaAGGCCGAGgCCGc -3'
miRNA:   3'- -GCU---UGGGCUcGG-GcUCCGGCUCgGGC- -5'
26361 3' -63.4 NC_005345.2 + 42083 0.67 0.260204
Target:  5'- cCGGGCCUcGGCCgCGuaguccGGCCGGGCCg- -3'
miRNA:   3'- -GCUUGGGcUCGG-GCu-----CCGGCUCGGgc -5'
26361 3' -63.4 NC_005345.2 + 30909 0.67 0.260204
Target:  5'- gCGAGCagcaCCGGGaCC-AGGgCGAGCCCGa -3'
miRNA:   3'- -GCUUG----GGCUCgGGcUCCgGCUCGGGC- -5'
26361 3' -63.4 NC_005345.2 + 28614 0.67 0.260204
Target:  5'- gCGcAugCCGGGCgugucgCCGcAGGCCGAuCCCGg -3'
miRNA:   3'- -GC-UugGGCUCG------GGC-UCCGGCUcGGGC- -5'
26361 3' -63.4 NC_005345.2 + 3564 0.67 0.253949
Target:  5'- -cGACCCGuucgcGGCCCccGGCCGcaaccGGCCCGc -3'
miRNA:   3'- gcUUGGGC-----UCGGGcuCCGGC-----UCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.