miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26361 5' -53.2 NC_005345.2 + 46043 0.66 0.844623
Target:  5'- cCUCGguAugUCcgGGGCCCGAgGGUCGAucaggcgGCCg -3'
miRNA:   3'- -GGGC--UugAG--CUUGGGCU-CCAGCU-------UGG- -5'
26361 5' -53.2 NC_005345.2 + 17565 0.66 0.844623
Target:  5'- gCCGAGCa-GGGCCCGgcagagcugcaucAGGUCGuGCg -3'
miRNA:   3'- gGGCUUGagCUUGGGC-------------UCCAGCuUGg -5'
26361 5' -53.2 NC_005345.2 + 48345 0.66 0.842028
Target:  5'- cCCCGGGCgagcagguguaagCGGGCCC--GGUCGGcaucccccGCCg -3'
miRNA:   3'- -GGGCUUGa------------GCUUGGGcuCCAGCU--------UGG- -5'
26361 5' -53.2 NC_005345.2 + 17306 0.66 0.836779
Target:  5'- gCCGGACgggCGAACCCGuccUUGA-CCa -3'
miRNA:   3'- gGGCUUGa--GCUUGGGCuccAGCUuGG- -5'
26361 5' -53.2 NC_005345.2 + 20584 0.66 0.836779
Target:  5'- uCCCGGGCcCaAAUCCGGGGccggCGGGCg -3'
miRNA:   3'- -GGGCUUGaGcUUGGGCUCCa---GCUUGg -5'
26361 5' -53.2 NC_005345.2 + 5032 0.66 0.836779
Target:  5'- -aCGAACgUCGAcgagcgcaGCaUCGAGGgCGAGCCg -3'
miRNA:   3'- ggGCUUG-AGCU--------UG-GGCUCCaGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 22631 0.66 0.836779
Target:  5'- uUCCGGcGCUCGuGCCgggugcaaGGGGUCGA-CCu -3'
miRNA:   3'- -GGGCU-UGAGCuUGGg-------CUCCAGCUuGG- -5'
26361 5' -53.2 NC_005345.2 + 17126 0.66 0.836779
Target:  5'- -------cCGAGgUCGAGGUCGAACCc -3'
miRNA:   3'- gggcuugaGCUUgGGCUCCAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 38122 0.66 0.836779
Target:  5'- cCCCG-GCUgCGG--CCGGGGUCGucACCu -3'
miRNA:   3'- -GGGCuUGA-GCUugGGCUCCAGCu-UGG- -5'
26361 5' -53.2 NC_005345.2 + 30499 0.66 0.836779
Target:  5'- gCCGggUcauggCGAACCCG-GG-CGGguACCg -3'
miRNA:   3'- gGGCuuGa----GCUUGGGCuCCaGCU--UGG- -5'
26361 5' -53.2 NC_005345.2 + 44582 0.66 0.835013
Target:  5'- aCCGGACUCGGGCagcagucguacaCGcugccgucguccGGGUCGuGCCc -3'
miRNA:   3'- gGGCUUGAGCUUGg-----------GC------------UCCAGCuUGG- -5'
26361 5' -53.2 NC_005345.2 + 45760 0.66 0.834126
Target:  5'- gCCCGAACUCGccgCCGuGGcacacguaucgcucUCGAugCu -3'
miRNA:   3'- -GGGCUUGAGCuugGGCuCC--------------AGCUugG- -5'
26361 5' -53.2 NC_005345.2 + 5392 0.66 0.827862
Target:  5'- -gCGAguccACUCaGGCCCGGcGGUCG-GCCg -3'
miRNA:   3'- ggGCU----UGAGcUUGGGCU-CCAGCuUGG- -5'
26361 5' -53.2 NC_005345.2 + 19873 0.66 0.827862
Target:  5'- -gCGAcCUCGAACCgCGcgccgauguugcGGG-CGAGCCg -3'
miRNA:   3'- ggGCUuGAGCUUGG-GC------------UCCaGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 45542 0.66 0.827862
Target:  5'- gCgCGAGCagggCGAcagcGgCCGAGGUCGGggcggGCCg -3'
miRNA:   3'- -GgGCUUGa---GCU----UgGGCUCCAGCU-----UGG- -5'
26361 5' -53.2 NC_005345.2 + 16616 0.66 0.827862
Target:  5'- -aCGGGCggccCGGACCCGcgcAGaUCGGGCCg -3'
miRNA:   3'- ggGCUUGa---GCUUGGGC---UCcAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 41516 0.66 0.827862
Target:  5'- uCCCGAACgcgGAGCgCGAGcGUCucggcGACCu -3'
miRNA:   3'- -GGGCUUGag-CUUGgGCUC-CAGc----UUGG- -5'
26361 5' -53.2 NC_005345.2 + 37739 0.66 0.827862
Target:  5'- gCCGGcuGgUCGGcguCgUCGAGGUCGAGCUg -3'
miRNA:   3'- gGGCU--UgAGCUu--G-GGCUCCAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 16093 0.66 0.827862
Target:  5'- cCCCcacCUaCGAGCCCaacGUCGAGCCg -3'
miRNA:   3'- -GGGcuuGA-GCUUGGGcucCAGCUUGG- -5'
26361 5' -53.2 NC_005345.2 + 25454 0.67 0.819661
Target:  5'- cCCCGuaccgcucgcgugcGCUCGGcccGCCCGAccggccgcgacccuGGUCGGcGCCg -3'
miRNA:   3'- -GGGCu-------------UGAGCU---UGGGCU--------------CCAGCU-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.