Results 1 - 20 of 116 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26362 | 5' | -61 | NC_005345.2 | + | 5093 | 0.66 | 0.419039 |
Target: 5'- -aGUUcCGCCGCGa--GCGCgGCAUCCc -3' miRNA: 3'- ugCAA-GCGGCGUccaCGCGgCGUGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 22857 | 0.66 | 0.40996 |
Target: 5'- cCGgUCGCCGgGucGGUGCGCUucgcgaacuuGUGCCCc -3' miRNA: 3'- uGCaAGCGGCgU--CCACGCGG----------CGUGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 10675 | 0.66 | 0.40996 |
Target: 5'- gGCG--CGgCGCGGGaagugcccGCGCUGUGCCCg -3' miRNA: 3'- -UGCaaGCgGCGUCCa-------CGCGGCGUGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 43014 | 0.66 | 0.40996 |
Target: 5'- uGCGacCGgguCCGCAGGUucaacaGCGCCGUACg- -3' miRNA: 3'- -UGCaaGC---GGCGUCCA------CGCGGCGUGgg -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 18275 | 0.66 | 0.40996 |
Target: 5'- ---cUCGCCGaucuGUGCGUCGCGCUg -3' miRNA: 3'- ugcaAGCGGCguc-CACGCGGCGUGGg -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 35642 | 0.66 | 0.401004 |
Target: 5'- cACGaUCGa--CGGGUGCucGCCGCGCCa -3' miRNA: 3'- -UGCaAGCggcGUCCACG--CGGCGUGGg -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 12998 | 0.66 | 0.401004 |
Target: 5'- -aGUUCgcgcugccgGCCGCAcGGUgGCGgUGUGCCCa -3' miRNA: 3'- ugCAAG---------CGGCGU-CCA-CGCgGCGUGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 13648 | 0.66 | 0.401004 |
Target: 5'- gGCGUgagCGCCgacgaGCAGc-GCGCCGC-CCUc -3' miRNA: 3'- -UGCAa--GCGG-----CGUCcaCGCGGCGuGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 12770 | 0.66 | 0.401004 |
Target: 5'- ----aCGCCGCGGccGCGgagCGCGCCCg -3' miRNA: 3'- ugcaaGCGGCGUCcaCGCg--GCGUGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 7841 | 0.66 | 0.392173 |
Target: 5'- gGCGUccaGCCGCcg--GCGCCGgCACCg -3' miRNA: 3'- -UGCAag-CGGCGuccaCGCGGC-GUGGg -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 8037 | 0.66 | 0.392173 |
Target: 5'- cCGUa--CCGCGGGcGUGCUGCgGCCCg -3' miRNA: 3'- uGCAagcGGCGUCCaCGCGGCG-UGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 28109 | 0.66 | 0.392173 |
Target: 5'- gGCGgUCGCCgGCGcGcGUGcCGaggaaCGCACCCg -3' miRNA: 3'- -UGCaAGCGG-CGU-C-CAC-GCg----GCGUGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 19096 | 0.66 | 0.38347 |
Target: 5'- ---cUCGCCGUcGGUGuCGUCG-GCCCa -3' miRNA: 3'- ugcaAGCGGCGuCCAC-GCGGCgUGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 14706 | 0.66 | 0.38347 |
Target: 5'- uCGUUCGUCGCcguguuGUGCaGCgCGuCGCCCa -3' miRNA: 3'- uGCAAGCGGCGuc----CACG-CG-GC-GUGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 44037 | 0.66 | 0.38347 |
Target: 5'- ----nCGCCGUAGGaggGCaucgggauGCCGCGCUCg -3' miRNA: 3'- ugcaaGCGGCGUCCa--CG--------CGGCGUGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 20123 | 0.66 | 0.38347 |
Target: 5'- uCGcugUGCCGUAGGcguaGCGugaacaCCGCACCCu -3' miRNA: 3'- uGCaa-GCGGCGUCCa---CGC------GGCGUGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 25102 | 0.66 | 0.38347 |
Target: 5'- gGCGUUCggGCCGCggcugcaggugaAGGUGaCGCgGaacCACCCc -3' miRNA: 3'- -UGCAAG--CGGCG------------UCCAC-GCGgC---GUGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 14210 | 0.66 | 0.38347 |
Target: 5'- gUGUcCGCCgaGCAGGcccuCGCCGcCGCCCu -3' miRNA: 3'- uGCAaGCGG--CGUCCac--GCGGC-GUGGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 4920 | 0.66 | 0.38347 |
Target: 5'- uGCGgcaGCCGCAcGUGCGCUcCGgCCg -3' miRNA: 3'- -UGCaagCGGCGUcCACGCGGcGUgGG- -5' |
|||||||
26362 | 5' | -61 | NC_005345.2 | + | 47893 | 0.66 | 0.38347 |
Target: 5'- gGCGU--GCUGU-GGUcGUGCCGCAgCCCg -3' miRNA: 3'- -UGCAagCGGCGuCCA-CGCGGCGU-GGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home