miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26362 5' -61 NC_005345.2 + 5093 0.66 0.419039
Target:  5'- -aGUUcCGCCGCGa--GCGCgGCAUCCc -3'
miRNA:   3'- ugCAA-GCGGCGUccaCGCGgCGUGGG- -5'
26362 5' -61 NC_005345.2 + 22857 0.66 0.40996
Target:  5'- cCGgUCGCCGgGucGGUGCGCUucgcgaacuuGUGCCCc -3'
miRNA:   3'- uGCaAGCGGCgU--CCACGCGG----------CGUGGG- -5'
26362 5' -61 NC_005345.2 + 10675 0.66 0.40996
Target:  5'- gGCG--CGgCGCGGGaagugcccGCGCUGUGCCCg -3'
miRNA:   3'- -UGCaaGCgGCGUCCa-------CGCGGCGUGGG- -5'
26362 5' -61 NC_005345.2 + 43014 0.66 0.40996
Target:  5'- uGCGacCGgguCCGCAGGUucaacaGCGCCGUACg- -3'
miRNA:   3'- -UGCaaGC---GGCGUCCA------CGCGGCGUGgg -5'
26362 5' -61 NC_005345.2 + 18275 0.66 0.40996
Target:  5'- ---cUCGCCGaucuGUGCGUCGCGCUg -3'
miRNA:   3'- ugcaAGCGGCguc-CACGCGGCGUGGg -5'
26362 5' -61 NC_005345.2 + 35642 0.66 0.401004
Target:  5'- cACGaUCGa--CGGGUGCucGCCGCGCCa -3'
miRNA:   3'- -UGCaAGCggcGUCCACG--CGGCGUGGg -5'
26362 5' -61 NC_005345.2 + 12998 0.66 0.401004
Target:  5'- -aGUUCgcgcugccgGCCGCAcGGUgGCGgUGUGCCCa -3'
miRNA:   3'- ugCAAG---------CGGCGU-CCA-CGCgGCGUGGG- -5'
26362 5' -61 NC_005345.2 + 13648 0.66 0.401004
Target:  5'- gGCGUgagCGCCgacgaGCAGc-GCGCCGC-CCUc -3'
miRNA:   3'- -UGCAa--GCGG-----CGUCcaCGCGGCGuGGG- -5'
26362 5' -61 NC_005345.2 + 12770 0.66 0.401004
Target:  5'- ----aCGCCGCGGccGCGgagCGCGCCCg -3'
miRNA:   3'- ugcaaGCGGCGUCcaCGCg--GCGUGGG- -5'
26362 5' -61 NC_005345.2 + 7841 0.66 0.392173
Target:  5'- gGCGUccaGCCGCcg--GCGCCGgCACCg -3'
miRNA:   3'- -UGCAag-CGGCGuccaCGCGGC-GUGGg -5'
26362 5' -61 NC_005345.2 + 8037 0.66 0.392173
Target:  5'- cCGUa--CCGCGGGcGUGCUGCgGCCCg -3'
miRNA:   3'- uGCAagcGGCGUCCaCGCGGCG-UGGG- -5'
26362 5' -61 NC_005345.2 + 28109 0.66 0.392173
Target:  5'- gGCGgUCGCCgGCGcGcGUGcCGaggaaCGCACCCg -3'
miRNA:   3'- -UGCaAGCGG-CGU-C-CAC-GCg----GCGUGGG- -5'
26362 5' -61 NC_005345.2 + 19096 0.66 0.38347
Target:  5'- ---cUCGCCGUcGGUGuCGUCG-GCCCa -3'
miRNA:   3'- ugcaAGCGGCGuCCAC-GCGGCgUGGG- -5'
26362 5' -61 NC_005345.2 + 14706 0.66 0.38347
Target:  5'- uCGUUCGUCGCcguguuGUGCaGCgCGuCGCCCa -3'
miRNA:   3'- uGCAAGCGGCGuc----CACG-CG-GC-GUGGG- -5'
26362 5' -61 NC_005345.2 + 44037 0.66 0.38347
Target:  5'- ----nCGCCGUAGGaggGCaucgggauGCCGCGCUCg -3'
miRNA:   3'- ugcaaGCGGCGUCCa--CG--------CGGCGUGGG- -5'
26362 5' -61 NC_005345.2 + 20123 0.66 0.38347
Target:  5'- uCGcugUGCCGUAGGcguaGCGugaacaCCGCACCCu -3'
miRNA:   3'- uGCaa-GCGGCGUCCa---CGC------GGCGUGGG- -5'
26362 5' -61 NC_005345.2 + 25102 0.66 0.38347
Target:  5'- gGCGUUCggGCCGCggcugcaggugaAGGUGaCGCgGaacCACCCc -3'
miRNA:   3'- -UGCAAG--CGGCG------------UCCAC-GCGgC---GUGGG- -5'
26362 5' -61 NC_005345.2 + 14210 0.66 0.38347
Target:  5'- gUGUcCGCCgaGCAGGcccuCGCCGcCGCCCu -3'
miRNA:   3'- uGCAaGCGG--CGUCCac--GCGGC-GUGGG- -5'
26362 5' -61 NC_005345.2 + 4920 0.66 0.38347
Target:  5'- uGCGgcaGCCGCAcGUGCGCUcCGgCCg -3'
miRNA:   3'- -UGCaagCGGCGUcCACGCGGcGUgGG- -5'
26362 5' -61 NC_005345.2 + 47893 0.66 0.38347
Target:  5'- gGCGU--GCUGU-GGUcGUGCCGCAgCCCg -3'
miRNA:   3'- -UGCAagCGGCGuCCA-CGCGGCGU-GGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.