miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26364 3' -56.7 NC_005345.2 + 32091 0.66 0.568751
Target:  5'- uCGGGCUCGgGUucgACCUCGGGCUCGGg -3'
miRNA:   3'- uGCUUGGGCaCG---UGGAGCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 42055 0.67 0.557899
Target:  5'- cGCGGGCCguuucgaccguCGUGCACUUCcGGGCCuCGGc -3'
miRNA:   3'- -UGCUUGG-----------GCACGUGGAG-CUUGG-GCUu -5'
26364 3' -56.7 NC_005345.2 + 16955 0.67 0.557898
Target:  5'- gACGAgacGCCuCG-GCACCUCGGccggcugccguGCCCGu- -3'
miRNA:   3'- -UGCU---UGG-GCaCGUGGAGCU-----------UGGGCuu -5'
26364 3' -56.7 NC_005345.2 + 41258 0.67 0.53638
Target:  5'- uACGAGCagCCGUGCgccGCCUCGGcguCCCa-- -3'
miRNA:   3'- -UGCUUG--GGCACG---UGGAGCUu--GGGcuu -5'
26364 3' -56.7 NC_005345.2 + 21251 0.67 0.536379
Target:  5'- cCGAACgCGUcgccgagcuGUACgUCGAACCCGGc -3'
miRNA:   3'- uGCUUGgGCA---------CGUGgAGCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 6574 0.67 0.525728
Target:  5'- gGCGGACCCGUgacgggcaguucGCugCUCGucGACUCGu- -3'
miRNA:   3'- -UGCUUGGGCA------------CGugGAGC--UUGGGCuu -5'
26364 3' -56.7 NC_005345.2 + 6491 0.67 0.525727
Target:  5'- gGCGAGCCCGagGCguggacGCCgcaGGGCUCGAAg -3'
miRNA:   3'- -UGCUUGGGCa-CG------UGGag-CUUGGGCUU- -5'
26364 3' -56.7 NC_005345.2 + 16114 0.67 0.525727
Target:  5'- uCGAGCCgGaccGCACCccgcggcCGAGCCCGAu -3'
miRNA:   3'- uGCUUGGgCa--CGUGGa------GCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 17990 0.67 0.515157
Target:  5'- uCGAucuCCCGUGUcgagGCCUCGAccGCCUGu- -3'
miRNA:   3'- uGCUu--GGGCACG----UGGAGCU--UGGGCuu -5'
26364 3' -56.7 NC_005345.2 + 3164 0.67 0.515157
Target:  5'- gGCGAGCUCGUcgggGUGCCgggucggCGAGCCCuGAGg -3'
miRNA:   3'- -UGCUUGGGCA----CGUGGa------GCUUGGG-CUU- -5'
26364 3' -56.7 NC_005345.2 + 13473 0.67 0.515157
Target:  5'- gACGAACCCG-GCgACCUUGu-CCCa-- -3'
miRNA:   3'- -UGCUUGGGCaCG-UGGAGCuuGGGcuu -5'
26364 3' -56.7 NC_005345.2 + 17417 0.67 0.515156
Target:  5'- cCGcACCCGaggUGCACC-CGAACCCc-- -3'
miRNA:   3'- uGCuUGGGC---ACGUGGaGCUUGGGcuu -5'
26364 3' -56.7 NC_005345.2 + 43518 0.67 0.515156
Target:  5'- gGCGAACCCG-GCGCUcgCGGAgCgGAu -3'
miRNA:   3'- -UGCUUGGGCaCGUGGa-GCUUgGgCUu -5'
26364 3' -56.7 NC_005345.2 + 17270 0.67 0.515156
Target:  5'- cCGAACUCaccGCACC-CGAACCCGu- -3'
miRNA:   3'- uGCUUGGGca-CGUGGaGCUUGGGCuu -5'
26364 3' -56.7 NC_005345.2 + 12713 0.67 0.515156
Target:  5'- gGCGAugcaGCCCGUGUucGCCgUCGAgaucGCCCa-- -3'
miRNA:   3'- -UGCU----UGGGCACG--UGG-AGCU----UGGGcuu -5'
26364 3' -56.7 NC_005345.2 + 23369 0.67 0.515156
Target:  5'- aGCGGGCCgagGCGCC-CGAgcuGCCCGAc -3'
miRNA:   3'- -UGCUUGGgcaCGUGGaGCU---UGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 30509 0.67 0.512002
Target:  5'- gGCGAACCCGggcggGUACCggcagCGGACgaucgggcaguaugCCGAGa -3'
miRNA:   3'- -UGCUUGGGCa----CGUGGa----GCUUG--------------GGCUU- -5'
26364 3' -56.7 NC_005345.2 + 39069 0.67 0.504673
Target:  5'- --cGGCCCGgaugacgaGCGCCUCGAcggcgucgaACCCGAu -3'
miRNA:   3'- ugcUUGGGCa-------CGUGGAGCU---------UGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 29697 0.67 0.503629
Target:  5'- gGCGAACgCGaucgcgcUGCugCcCGAGCCCGGu -3'
miRNA:   3'- -UGCUUGgGC-------ACGugGaGCUUGGGCUu -5'
26364 3' -56.7 NC_005345.2 + 17877 0.68 0.494282
Target:  5'- cGCGcACCCGcccccGCACCcgCGcACCCGAGu -3'
miRNA:   3'- -UGCuUGGGCa----CGUGGa-GCuUGGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.