miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26364 5' -61.8 NC_005345.2 + 10652 0.66 0.390924
Target:  5'- -aCUCaGGGACCgcggaccgguGGGgcgcgGCGCGGGa-- -3'
miRNA:   3'- ggGAGaCCCUGG----------CCCa----CGCGCCCaag -5'
26364 5' -61.8 NC_005345.2 + 42999 0.66 0.373856
Target:  5'- aCCUCgaugagccggUGcGACCGGGUcCGCaGGUUCa -3'
miRNA:   3'- gGGAG----------ACcCUGGCCCAcGCGcCCAAG- -5'
26364 5' -61.8 NC_005345.2 + 2380 0.66 0.357301
Target:  5'- aCCUCgcGGGcCCaaGGGUGUucGCGGGUg- -3'
miRNA:   3'- gGGAGa-CCCuGG--CCCACG--CGCCCAag -5'
26364 5' -61.8 NC_005345.2 + 24812 0.66 0.349219
Target:  5'- gCCg--GGcGACCGGaucGUGCuCGGGUUCg -3'
miRNA:   3'- gGGagaCC-CUGGCC---CACGcGCCCAAG- -5'
26364 5' -61.8 NC_005345.2 + 31464 0.67 0.333448
Target:  5'- gCCg--GGGugCGGGUGUgagGCGGGc-- -3'
miRNA:   3'- gGGagaCCCugGCCCACG---CGCCCaag -5'
26364 5' -61.8 NC_005345.2 + 5549 0.67 0.32576
Target:  5'- cCCCUUUcGGG-UC-GGUGUGCGGGUg- -3'
miRNA:   3'- -GGGAGA-CCCuGGcCCACGCGCCCAag -5'
26364 5' -61.8 NC_005345.2 + 46598 0.67 0.303493
Target:  5'- gCCUCgcgcuGGAUCGGGgccgGCGCcGGGUg- -3'
miRNA:   3'- gGGAGac---CCUGGCCCa---CGCG-CCCAag -5'
26364 5' -61.8 NC_005345.2 + 32510 0.67 0.303493
Target:  5'- uCCCUCUGccGgCGGGcggcccgaucUGCGCGGGUcCg -3'
miRNA:   3'- -GGGAGACccUgGCCC----------ACGCGCCCAaG- -5'
26364 5' -61.8 NC_005345.2 + 35671 0.68 0.269017
Target:  5'- gCCgUUUGGGACaaGGUcGC-CGGGUUCg -3'
miRNA:   3'- -GGgAGACCCUGgcCCA-CGcGCCCAAG- -5'
26364 5' -61.8 NC_005345.2 + 31246 0.69 0.237769
Target:  5'- gUCCg--GGGucgggugcgcACuCGGGUGCGCGGGUg- -3'
miRNA:   3'- -GGGagaCCC----------UG-GCCCACGCGCCCAag -5'
26364 5' -61.8 NC_005345.2 + 32985 0.69 0.231896
Target:  5'- gUCCUCggcgcaGGcGGCCGGGgugGCGgGGGcgUCg -3'
miRNA:   3'- -GGGAGa-----CC-CUGGCCCa--CGCgCCCa-AG- -5'
26364 5' -61.8 NC_005345.2 + 31145 0.69 0.226146
Target:  5'- aCCUCgaucGcACuCGGGUGCGCGGGgUCg -3'
miRNA:   3'- gGGAGac--CcUG-GCCCACGCGCCCaAG- -5'
26364 5' -61.8 NC_005345.2 + 32106 0.7 0.215008
Target:  5'- aCCUC-GGGcUCGGGcaGCGCGGGUg- -3'
miRNA:   3'- gGGAGaCCCuGGCCCa-CGCGCCCAag -5'
26364 5' -61.8 NC_005345.2 + 31939 0.72 0.161876
Target:  5'- -gCUCggcGGGugCGGGUGCggguGCGGGUg- -3'
miRNA:   3'- ggGAGa--CCCugGCCCACG----CGCCCAag -5'
26364 5' -61.8 NC_005345.2 + 36615 0.72 0.145682
Target:  5'- ----aUGGcGGCCGGGcucgugccgcUGCGCGGGUUCg -3'
miRNA:   3'- gggagACC-CUGGCCC----------ACGCGCCCAAG- -5'
26364 5' -61.8 NC_005345.2 + 21691 0.72 0.141871
Target:  5'- cCCCUCaGGGcCCGGGaggUGCuGCGGGg-- -3'
miRNA:   3'- -GGGAGaCCCuGGCCC---ACG-CGCCCaag -5'
26364 5' -61.8 NC_005345.2 + 36909 0.73 0.130979
Target:  5'- -----cGGGACCGGGUGaGCGGGUcaUCg -3'
miRNA:   3'- gggagaCCCUGGCCCACgCGCCCA--AG- -5'
26364 5' -61.8 NC_005345.2 + 31744 0.77 0.070019
Target:  5'- aCCUC-GGGugCGGGUGCG-GGGUg- -3'
miRNA:   3'- gGGAGaCCCugGCCCACGCgCCCAag -5'
26364 5' -61.8 NC_005345.2 + 18074 1.11 0.000176
Target:  5'- uCCCUCUGGGACCGGGUGCGCGGGUUCg -3'
miRNA:   3'- -GGGAGACCCUGGCCCACGCGCCCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.