miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26366 5' -49.3 NC_005345.2 + 31426 0.66 0.951984
Target:  5'- cCCGgcgaUGAGCCCGAGGaUGAgcgcGGGUgcgaGGCg -3'
miRNA:   3'- -GGCa---GCUUGGGUUUC-ACU----UCUAg---CCG- -5'
26366 5' -49.3 NC_005345.2 + 19209 0.66 0.951532
Target:  5'- gUCGUCGAcucaugcgagcACCUgcgccuuGAAcGUGAGGuUCGGCu -3'
miRNA:   3'- -GGCAGCU-----------UGGG-------UUU-CACUUCuAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 35684 0.66 0.951077
Target:  5'- gCCGUCGGGCCaCAGcacgcc-GUCGGCg -3'
miRNA:   3'- -GGCAGCUUGG-GUUucacuucUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 24202 0.67 0.947334
Target:  5'- cCCGUCGGGgCCGAGuucGAGucgCGGCg -3'
miRNA:   3'- -GGCAGCUUgGGUUUcacUUCua-GCCG- -5'
26366 5' -49.3 NC_005345.2 + 39189 0.67 0.947334
Target:  5'- cCCGcagccCGAACCCGGGccGcGGGUUGGCg -3'
miRNA:   3'- -GGCa----GCUUGGGUUUcaCuUCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 40161 0.67 0.947334
Target:  5'- gCCGUCGGgcaggcacacGCCCGucgacGUGAgcgacAGGUCGaGCc -3'
miRNA:   3'- -GGCAGCU----------UGGGUuu---CACU-----UCUAGC-CG- -5'
26366 5' -49.3 NC_005345.2 + 36031 0.67 0.947334
Target:  5'- aCGgCGGGCguUCGAGGUGAAaGcgCGGCa -3'
miRNA:   3'- gGCaGCUUG--GGUUUCACUU-CuaGCCG- -5'
26366 5' -49.3 NC_005345.2 + 40750 0.67 0.947334
Target:  5'- cCCGUCGAccggcagcgGCUCGucGgGccGGUCGGCc -3'
miRNA:   3'- -GGCAGCU---------UGGGUuuCaCuuCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 5605 0.67 0.944406
Target:  5'- gCCGUgGGGCgCCGGgcucguggccgacgcGGUGAucgccgacccGAUCGGCa -3'
miRNA:   3'- -GGCAgCUUG-GGUU---------------UCACUu---------CUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 6414 0.67 0.937168
Target:  5'- uUCG-CGGGCCCGccGUc--GGUCGGCg -3'
miRNA:   3'- -GGCaGCUUGGGUuuCAcuuCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 7474 0.67 0.937168
Target:  5'- gUCGcCGGuaGCCCAc-GUGAAGGgagUGGCg -3'
miRNA:   3'- -GGCaGCU--UGGGUuuCACUUCUa--GCCG- -5'
26366 5' -49.3 NC_005345.2 + 5231 0.67 0.931077
Target:  5'- gCCGUCGGgguGCCCGcgguacacgguggGcGUGAcGggCGGCa -3'
miRNA:   3'- -GGCAGCU---UGGGU-------------UuCACUuCuaGCCG- -5'
26366 5' -49.3 NC_005345.2 + 48402 0.67 0.929931
Target:  5'- aCGUCGAccuggacgcccaccACCuCAAGGUGAAGGaaGuGCu -3'
miRNA:   3'- gGCAGCU--------------UGG-GUUUCACUUCUagC-CG- -5'
26366 5' -49.3 NC_005345.2 + 22997 0.67 0.925828
Target:  5'- aUCGUCac-CCCGGAGacgcUGGAGAUucCGGCg -3'
miRNA:   3'- -GGCAGcuuGGGUUUC----ACUUCUA--GCCG- -5'
26366 5' -49.3 NC_005345.2 + 32691 0.68 0.919715
Target:  5'- gCGUCGAcACCgAGGGgGAAcacAUCGGCg -3'
miRNA:   3'- gGCAGCU-UGGgUUUCaCUUc--UAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 7163 0.68 0.919715
Target:  5'- -gGUCGGACCCGcuGUcGcAGGAacugCGGCa -3'
miRNA:   3'- ggCAGCUUGGGUuuCA-C-UUCUa---GCCG- -5'
26366 5' -49.3 NC_005345.2 + 30012 0.68 0.913308
Target:  5'- aCGUCccGgCCGAGGUcgccGAgcGGAUCGGCg -3'
miRNA:   3'- gGCAGcuUgGGUUUCA----CU--UCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 29097 0.68 0.913308
Target:  5'- cUCGUgGGACaCCGAGuccAAGAUCGGCc -3'
miRNA:   3'- -GGCAgCUUG-GGUUUcacUUCUAGCCG- -5'
26366 5' -49.3 NC_005345.2 + 33335 0.68 0.906608
Target:  5'- gCCGUCGG--CCGGAGUcgccGAGAgCGGCg -3'
miRNA:   3'- -GGCAGCUugGGUUUCAc---UUCUaGCCG- -5'
26366 5' -49.3 NC_005345.2 + 31388 0.68 0.906608
Target:  5'- aCGggCGggUCCuAGGUGAGGGUgagGGCg -3'
miRNA:   3'- gGCa-GCuuGGGuUUCACUUCUAg--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.