miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26367 3' -55 NC_005345.2 + 33826 0.65 0.719965
Target:  5'- cGCcc-CGGCCGACGCAccgaccuacAGCcgGGCGAc -3'
miRNA:   3'- -CGuaaGCCGGCUGCGUuc-------UCG--UCGCU- -5'
26367 3' -55 NC_005345.2 + 5410 0.65 0.719965
Target:  5'- gGCggUCGGCCGAgcgucuCGCcGAGuucuucGGCGGCGc -3'
miRNA:   3'- -CGuaAGCCGGCU------GCG-UUC------UCGUCGCu -5'
26367 3' -55 NC_005345.2 + 30049 0.65 0.719965
Target:  5'- cGCGUg-GGCCGACGaCAccGA-CGGCGAg -3'
miRNA:   3'- -CGUAagCCGGCUGC-GUu-CUcGUCGCU- -5'
26367 3' -55 NC_005345.2 + 34600 0.65 0.719965
Target:  5'- cGCGUUCaGcGCCGGCGuCAAcuGGGUGcGCGAg -3'
miRNA:   3'- -CGUAAG-C-CGGCUGC-GUU--CUCGU-CGCU- -5'
26367 3' -55 NC_005345.2 + 3947 0.65 0.719965
Target:  5'- cGCcg-CGGCCGGCaGCcucucGGGCGGCa- -3'
miRNA:   3'- -CGuaaGCCGGCUG-CGuu---CUCGUCGcu -5'
26367 3' -55 NC_005345.2 + 8761 0.65 0.719965
Target:  5'- aGCAUcggggaGGCUG-CGCAGGAugagcGCGGUGAu -3'
miRNA:   3'- -CGUAag----CCGGCuGCGUUCU-----CGUCGCU- -5'
26367 3' -55 NC_005345.2 + 39337 0.66 0.709131
Target:  5'- gGCAUcggCGGCacCGGcCGCGAcacAGCGGCGAa -3'
miRNA:   3'- -CGUAa--GCCG--GCU-GCGUUc--UCGUCGCU- -5'
26367 3' -55 NC_005345.2 + 3282 0.66 0.709131
Target:  5'- cGCAgcugCGuGCCGuccACGuCGAGGGCgucGGCGAg -3'
miRNA:   3'- -CGUaa--GC-CGGC---UGC-GUUCUCG---UCGCU- -5'
26367 3' -55 NC_005345.2 + 39841 0.66 0.709131
Target:  5'- cGCGggcUCGGCCGGcCGCAccuGGCAG-GAc -3'
miRNA:   3'- -CGUa--AGCCGGCU-GCGUuc-UCGUCgCU- -5'
26367 3' -55 NC_005345.2 + 26759 0.66 0.709131
Target:  5'- ---cUCGacgaguccCCGGCGCGGGuGCGGCGGa -3'
miRNA:   3'- cguaAGCc-------GGCUGCGUUCuCGUCGCU- -5'
26367 3' -55 NC_005345.2 + 35740 0.66 0.709131
Target:  5'- cGCgg-CGGCCGAac---GAGCGGCGGc -3'
miRNA:   3'- -CGuaaGCCGGCUgcguuCUCGUCGCU- -5'
26367 3' -55 NC_005345.2 + 16190 0.66 0.705866
Target:  5'- cGCGgacgCGGCCGGCGUccGccucgcgcucgacaAGCAGCu- -3'
miRNA:   3'- -CGUaa--GCCGGCUGCGuuC--------------UCGUCGcu -5'
26367 3' -55 NC_005345.2 + 44496 0.66 0.69822
Target:  5'- gGCGa-CGGCCGAgGCAc-AGCAGgCGAc -3'
miRNA:   3'- -CGUaaGCCGGCUgCGUucUCGUC-GCU- -5'
26367 3' -55 NC_005345.2 + 30372 0.66 0.69822
Target:  5'- gGCAgcccgCGGCgGGCGCAGGucgaGGCGu -3'
miRNA:   3'- -CGUaa---GCCGgCUGCGUUCucg-UCGCu -5'
26367 3' -55 NC_005345.2 + 13254 0.66 0.69822
Target:  5'- aCcgUCGGCaCGAC-CGGcGAGCAGCu- -3'
miRNA:   3'- cGuaAGCCG-GCUGcGUU-CUCGUCGcu -5'
26367 3' -55 NC_005345.2 + 39049 0.66 0.69822
Target:  5'- ----cCGGCCGgugggcgcuACGCA--GGCGGCGAu -3'
miRNA:   3'- cguaaGCCGGC---------UGCGUucUCGUCGCU- -5'
26367 3' -55 NC_005345.2 + 41072 0.66 0.69822
Target:  5'- uGCAgccCGGCCGcCuGCuc-GGCGGCGAg -3'
miRNA:   3'- -CGUaa-GCCGGCuG-CGuucUCGUCGCU- -5'
26367 3' -55 NC_005345.2 + 3705 0.66 0.687243
Target:  5'- ---cUCGGCCGccgGCgGCGAGGuGCAGCuGAu -3'
miRNA:   3'- cguaAGCCGGC---UG-CGUUCU-CGUCG-CU- -5'
26367 3' -55 NC_005345.2 + 45845 0.66 0.687243
Target:  5'- gGCGgcgCGGgCGACGaucguGGGGGCGGgGAg -3'
miRNA:   3'- -CGUaa-GCCgGCUGCg----UUCUCGUCgCU- -5'
26367 3' -55 NC_005345.2 + 35090 0.66 0.687243
Target:  5'- uGCAgguucUCGGCgGugGUgcGGGCguGGCGGg -3'
miRNA:   3'- -CGUa----AGCCGgCugCGuuCUCG--UCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.