miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26367 5' -62.9 NC_005345.2 + 18510 0.66 0.311812
Target:  5'- cGCuGCgcucgGCGUCCUCGGcgccaugugcaccGGuGGGCUGCu -3'
miRNA:   3'- uCGuCG-----CGCGGGAGCU-------------UC-CCCGACGc -5'
26367 5' -62.9 NC_005345.2 + 35495 0.66 0.283799
Target:  5'- gGGCGGCGCGCUgCUCGucGGcGCUcacgccGCGc -3'
miRNA:   3'- -UCGUCGCGCGG-GAGCuuCCcCGA------CGC- -5'
26367 5' -62.9 NC_005345.2 + 30127 0.66 0.283799
Target:  5'- gAGCAGCG-GCCC--GAGGGcGGC-GCGc -3'
miRNA:   3'- -UCGUCGCgCGGGagCUUCC-CCGaCGC- -5'
26367 5' -62.9 NC_005345.2 + 28993 0.67 0.270223
Target:  5'- cGGCGGggcuCGUGCCUUCGAGGGuGCgGUGu -3'
miRNA:   3'- -UCGUC----GCGCGGGAGCUUCCcCGaCGC- -5'
26367 5' -62.9 NC_005345.2 + 19012 0.67 0.270223
Target:  5'- gGGCGGCGCcucgacgucgccGCCCgagccgUCGGuacGGGGGUcgGCGa -3'
miRNA:   3'- -UCGUCGCG------------CGGG------AGCU---UCCCCGa-CGC- -5'
26367 5' -62.9 NC_005345.2 + 17158 0.67 0.270223
Target:  5'- gGGCGGuCGUGCCgaCGggGGcGGCguagaagucgGCGc -3'
miRNA:   3'- -UCGUC-GCGCGGgaGCuuCC-CCGa---------CGC- -5'
26367 5' -62.9 NC_005345.2 + 16889 0.67 0.270223
Target:  5'- uGGCGGCggaagGCGCCCgUCGAGGcacugcugccGCUGCGg -3'
miRNA:   3'- -UCGUCG-----CGCGGG-AGCUUCcc--------CGACGC- -5'
26367 5' -62.9 NC_005345.2 + 2359 0.67 0.262982
Target:  5'- uGGCGGCGCaGCCCggucgCGAccucgcgggcccaAGGGuGUUcGCGg -3'
miRNA:   3'- -UCGUCGCG-CGGGa----GCU-------------UCCC-CGA-CGC- -5'
26367 5' -62.9 NC_005345.2 + 37899 0.67 0.257174
Target:  5'- uGUAGUGguCGCCCuUCGc--GGGCUGCGg -3'
miRNA:   3'- uCGUCGC--GCGGG-AGCuucCCCGACGC- -5'
26367 5' -62.9 NC_005345.2 + 45732 0.67 0.244646
Target:  5'- cGCAGCGUccacaccgacacGUCgUCGAGGGGGaUGCc -3'
miRNA:   3'- uCGUCGCG------------CGGgAGCUUCCCCgACGc -5'
26367 5' -62.9 NC_005345.2 + 43918 0.67 0.244646
Target:  5'- cGCAGCGCGUCggCGAucAGGccGGCcGCGa -3'
miRNA:   3'- uCGUCGCGCGGgaGCU--UCC--CCGaCGC- -5'
26367 5' -62.9 NC_005345.2 + 40615 0.67 0.238574
Target:  5'- cAGCGGCGUGCCCgaacggUCGAGGcGGCccguccacUGCc -3'
miRNA:   3'- -UCGUCGCGCGGG------AGCUUCcCCG--------ACGc -5'
26367 5' -62.9 NC_005345.2 + 27864 0.67 0.238574
Target:  5'- cGGCGGCGCcCCCgaCGAcGGGGaCgacgGCGa -3'
miRNA:   3'- -UCGUCGCGcGGGa-GCUuCCCC-Ga---CGC- -5'
26367 5' -62.9 NC_005345.2 + 34764 0.68 0.221112
Target:  5'- cGGCGGUGaCGCgCggcuacgCGAucgugcAGGGGCUGCu -3'
miRNA:   3'- -UCGUCGC-GCGgGa------GCU------UCCCCGACGc -5'
26367 5' -62.9 NC_005345.2 + 19398 0.68 0.221112
Target:  5'- gAGCAGCgucGCGCCgagCUCGGuc-GGCUGCGc -3'
miRNA:   3'- -UCGUCG---CGCGG---GAGCUuccCCGACGC- -5'
26367 5' -62.9 NC_005345.2 + 34986 0.68 0.221112
Target:  5'- --gGGCGUGCagguaCUCGGcgccGGGGcGCUGCGg -3'
miRNA:   3'- ucgUCGCGCGg----GAGCU----UCCC-CGACGC- -5'
26367 5' -62.9 NC_005345.2 + 29186 0.68 0.22055
Target:  5'- cGGCAugcucuuGCGCaGCCCcuUCGAGGGcGcGCUGCu -3'
miRNA:   3'- -UCGU-------CGCG-CGGG--AGCUUCC-C-CGACGc -5'
26367 5' -62.9 NC_005345.2 + 37777 0.68 0.210085
Target:  5'- cGCAG-GCGgCCgCGAccGGGGCUGCu -3'
miRNA:   3'- uCGUCgCGCgGGaGCUu-CCCCGACGc -5'
26367 5' -62.9 NC_005345.2 + 18196 0.68 0.210085
Target:  5'- cGGCgaGGCGCGCgC-CGAGuGGGGCgccGCGu -3'
miRNA:   3'- -UCG--UCGCGCGgGaGCUU-CCCCGa--CGC- -5'
26367 5' -62.9 NC_005345.2 + 4364 0.68 0.199535
Target:  5'- gGGCgGGCGgGCCgCUCGguGGGGgUGuCGg -3'
miRNA:   3'- -UCG-UCGCgCGG-GAGCuuCCCCgAC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.