miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26371 3' -59.8 NC_005345.2 + 37266 0.66 0.477511
Target:  5'- gCGGUCGCGUCgucGUcgagGGGCACguCGUGCa- -3'
miRNA:   3'- -GCCGGCGCAGa--CG----CCUGUG--GUACGcu -5'
26371 3' -59.8 NC_005345.2 + 23903 0.66 0.477511
Target:  5'- aGGCCGaguuccugCUGCGGuucuacgagcuGCACCcgGUGAc -3'
miRNA:   3'- gCCGGCgca-----GACGCC-----------UGUGGuaCGCU- -5'
26371 3' -59.8 NC_005345.2 + 8412 0.66 0.477511
Target:  5'- cCGGUCGaCGgggCgcgGCuGGACGCCGaGCGGu -3'
miRNA:   3'- -GCCGGC-GCa--Ga--CG-CCUGUGGUaCGCU- -5'
26371 3' -59.8 NC_005345.2 + 30739 0.66 0.477511
Target:  5'- aCGGCCGUGa--GCGcGAgGCCG-GCGAg -3'
miRNA:   3'- -GCCGGCGCagaCGC-CUgUGGUaCGCU- -5'
26371 3' -59.8 NC_005345.2 + 34290 0.66 0.477511
Target:  5'- uCGGCCGCGUCgaGCGcccGCugCAgcccgGCa- -3'
miRNA:   3'- -GCCGGCGCAGa-CGCc--UGugGUa----CGcu -5'
26371 3' -59.8 NC_005345.2 + 25488 0.66 0.467669
Target:  5'- cCGGCCGCGaccCUGguCGG-CGCCGUccgccucgGCGAa -3'
miRNA:   3'- -GCCGGCGCa--GAC--GCCuGUGGUA--------CGCU- -5'
26371 3' -59.8 NC_005345.2 + 43955 0.66 0.467669
Target:  5'- cCGGCCGUGccgaUGCGuGCAgCCcgGCGGc -3'
miRNA:   3'- -GCCGGCGCag--ACGCcUGU-GGuaCGCU- -5'
26371 3' -59.8 NC_005345.2 + 6793 0.66 0.467669
Target:  5'- gCGGCUGgagucgcacaGUUgguaugcgGCGGACGCCAUGgCGGg -3'
miRNA:   3'- -GCCGGCg---------CAGa-------CGCCUGUGGUAC-GCU- -5'
26371 3' -59.8 NC_005345.2 + 41297 0.66 0.457932
Target:  5'- gGGCCGCcUCggUGCcGGCGCCG-GCGGc -3'
miRNA:   3'- gCCGGCGcAG--ACGcCUGUGGUaCGCU- -5'
26371 3' -59.8 NC_005345.2 + 5230 0.66 0.457932
Target:  5'- cCGGCCugaucgccgacGCG-CUGCGcGcCGCCGUGgCGAu -3'
miRNA:   3'- -GCCGG-----------CGCaGACGC-CuGUGGUAC-GCU- -5'
26371 3' -59.8 NC_005345.2 + 31524 0.66 0.447348
Target:  5'- cCGGCCGCGUCU-CG-ACGuCCAUugcugggggucgaGCGAg -3'
miRNA:   3'- -GCCGGCGCAGAcGCcUGU-GGUA-------------CGCU- -5'
26371 3' -59.8 NC_005345.2 + 1279 0.66 0.43879
Target:  5'- cCGGCCGaCGUCaccgucGcCGGGC-CCAUGCc- -3'
miRNA:   3'- -GCCGGC-GCAGa-----C-GCCUGuGGUACGcu -5'
26371 3' -59.8 NC_005345.2 + 30822 0.66 0.43879
Target:  5'- gGGCCGaCGUCgcgGCGuGGCugCA-GCa- -3'
miRNA:   3'- gCCGGC-GCAGa--CGC-CUGugGUaCGcu -5'
26371 3' -59.8 NC_005345.2 + 23200 0.66 0.43879
Target:  5'- cCGGCUGCGggaCUG-GGACgagAUCGUGUGGg -3'
miRNA:   3'- -GCCGGCGCa--GACgCCUG---UGGUACGCU- -5'
26371 3' -59.8 NC_005345.2 + 37644 0.66 0.43879
Target:  5'- gCGGCUGCaGUCcggcgucggUGCGGGCcGCC-UGCGc -3'
miRNA:   3'- -GCCGGCG-CAG---------ACGCCUG-UGGuACGCu -5'
26371 3' -59.8 NC_005345.2 + 37918 0.66 0.429392
Target:  5'- gGGCUGCGgcagcGCGGGCAgUCAUGCc- -3'
miRNA:   3'- gCCGGCGCaga--CGCCUGU-GGUACGcu -5'
26371 3' -59.8 NC_005345.2 + 45559 0.66 0.429392
Target:  5'- gCGGCCGagGUCgggGCGGGCcgguugcgGCCGggggccGCGAa -3'
miRNA:   3'- -GCCGGCg-CAGa--CGCCUG--------UGGUa-----CGCU- -5'
26371 3' -59.8 NC_005345.2 + 41854 0.67 0.420113
Target:  5'- gCGGCU-CGUcCUGCGGuuCGCCucgGCGAu -3'
miRNA:   3'- -GCCGGcGCA-GACGCCu-GUGGua-CGCU- -5'
26371 3' -59.8 NC_005345.2 + 46083 0.67 0.420113
Target:  5'- gGGCCGcCGgggcCUgcGCGGACAuCCAcGCGGc -3'
miRNA:   3'- gCCGGC-GCa---GA--CGCCUGU-GGUaCGCU- -5'
26371 3' -59.8 NC_005345.2 + 19657 0.67 0.420113
Target:  5'- aCGGCCGCcuUCggcaugagGauGACGCCcgGCGAc -3'
miRNA:   3'- -GCCGGCGc-AGa-------CgcCUGUGGuaCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.