miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26371 5' -57.1 NC_005345.2 + 18280 0.66 0.602194
Target:  5'- cGAUCuguGCGUCGCGCUgguCGGUGuccucGCGGCCAg -3'
miRNA:   3'- -CUGG---UGUAGUGCGG---GCCGU-----UGCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 43839 0.66 0.602194
Target:  5'- uGAUCACGUacUGCCCGGuCGACGgggcgucgGCCGg -3'
miRNA:   3'- -CUGGUGUAguGCGGGCC-GUUGC--------UGGU- -5'
26371 5' -57.1 NC_005345.2 + 23175 0.66 0.602193
Target:  5'- gGAUCACcgaCGCGCUCGGguuCGACCGg -3'
miRNA:   3'- -CUGGUGua-GUGCGGGCCguuGCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 39825 0.66 0.601098
Target:  5'- cGACCacccucgGCAUCGCggGCUCGGC--CGGCCGc -3'
miRNA:   3'- -CUGG-------UGUAGUG--CGGGCCGuuGCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 35309 0.66 0.595627
Target:  5'- cGGCCGuCcUCGCGCCgagcuuccgggcgauCGGCG-CGGCCGg -3'
miRNA:   3'- -CUGGU-GuAGUGCGG---------------GCCGUuGCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 7573 0.66 0.591255
Target:  5'- cGACCGag-CACGCCCGcgaGCAcgGCGAgCGc -3'
miRNA:   3'- -CUGGUguaGUGCGGGC---CGU--UGCUgGU- -5'
26371 5' -57.1 NC_005345.2 + 25459 0.66 0.591255
Target:  5'- uACCGCucgcgUGCGCUCGGCccgccCGACCGg -3'
miRNA:   3'- cUGGUGua---GUGCGGGCCGuu---GCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 25551 0.66 0.591255
Target:  5'- cGCCgGCGUCGCGCCgaacGCcGCGACCc -3'
miRNA:   3'- cUGG-UGUAGUGCGGgc--CGuUGCUGGu -5'
26371 5' -57.1 NC_005345.2 + 37300 0.66 0.591255
Target:  5'- gGGCCGaugccCACGCCgUGGCGuCGACCu -3'
miRNA:   3'- -CUGGUgua--GUGCGG-GCCGUuGCUGGu -5'
26371 5' -57.1 NC_005345.2 + 22807 0.66 0.580351
Target:  5'- -cCCACAcCGCGgaCGGCGACGGCaCGa -3'
miRNA:   3'- cuGGUGUaGUGCggGCCGUUGCUG-GU- -5'
26371 5' -57.1 NC_005345.2 + 30081 0.66 0.580351
Target:  5'- cGAUCGCGUagAC-CCCGuaGGCGACCAc -3'
miRNA:   3'- -CUGGUGUAg-UGcGGGCcgUUGCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 18977 0.66 0.580351
Target:  5'- cGCCACgcGUCgAUGCCCGaGCcuCGGCCc -3'
miRNA:   3'- cUGGUG--UAG-UGCGGGC-CGuuGCUGGu -5'
26371 5' -57.1 NC_005345.2 + 8369 0.66 0.58035
Target:  5'- --aCGCGaCACGCCCGcGCcggcCGACCGg -3'
miRNA:   3'- cugGUGUaGUGCGGGC-CGuu--GCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 46131 0.66 0.58035
Target:  5'- uGCUGCcgC-CGCCCGGCuacuggccuCGGCCGc -3'
miRNA:   3'- cUGGUGuaGuGCGGGCCGuu-------GCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 18650 0.66 0.58035
Target:  5'- -cCCGCggGUCGCuGUCCGGCAGCcucACCGa -3'
miRNA:   3'- cuGGUG--UAGUG-CGGGCCGUUGc--UGGU- -5'
26371 5' -57.1 NC_005345.2 + 14170 0.66 0.58035
Target:  5'- cGAgUACcugCACGCCCu-CGACGACCAg -3'
miRNA:   3'- -CUgGUGua-GUGCGGGccGUUGCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 5644 0.66 0.579262
Target:  5'- cGACCcgAUCGgcacCGCCCGGCGGgcccggaccgagcCGACCGc -3'
miRNA:   3'- -CUGGugUAGU----GCGGGCCGUU-------------GCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 34735 0.66 0.569489
Target:  5'- cGAUCGCccggCAgGCgUCGGCGACGugCAg -3'
miRNA:   3'- -CUGGUGua--GUgCG-GGCCGUUGCugGU- -5'
26371 5' -57.1 NC_005345.2 + 11839 0.66 0.569489
Target:  5'- gGGCgAgGUCgACGCCaCGGCGugGGCa- -3'
miRNA:   3'- -CUGgUgUAG-UGCGG-GCCGUugCUGgu -5'
26371 5' -57.1 NC_005345.2 + 594 0.66 0.569489
Target:  5'- -cCCGCAUCcgcgACGCCCG-CAuccUGACCAa -3'
miRNA:   3'- cuGGUGUAG----UGCGGGCcGUu--GCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.