miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26371 5' -57.1 NC_005345.2 + 21470 1.08 0.000649
Target:  5'- cGACCACAUCACGCCCGGCAACGACCAc -3'
miRNA:   3'- -CUGGUGUAGUGCGGGCCGUUGCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 9286 0.71 0.29034
Target:  5'- cGGCCGCGgcguaccUCGCGgCCGGCGuugaguucgucgGCGACCc -3'
miRNA:   3'- -CUGGUGU-------AGUGCgGGCCGU------------UGCUGGu -5'
26371 5' -57.1 NC_005345.2 + 34072 0.71 0.298424
Target:  5'- aGGCCugAUCACGCaggcgcugcaggCCGGCGcccGCGACg- -3'
miRNA:   3'- -CUGGugUAGUGCG------------GGCCGU---UGCUGgu -5'
26371 5' -57.1 NC_005345.2 + 23175 0.66 0.602193
Target:  5'- gGAUCACcgaCGCGCUCGGguuCGACCGg -3'
miRNA:   3'- -CUGGUGua-GUGCGGGCCguuGCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 11554 0.76 0.154618
Target:  5'- cGACCGCGaaguUCAuCGCCCGGCAgcucgACGACgGg -3'
miRNA:   3'- -CUGGUGU----AGU-GCGGGCCGU-----UGCUGgU- -5'
26371 5' -57.1 NC_005345.2 + 29974 0.74 0.194159
Target:  5'- cGugCACGUCgacgggcagccguacGgGCCCGGCGACGACg- -3'
miRNA:   3'- -CugGUGUAG---------------UgCGGGCCGUUGCUGgu -5'
26371 5' -57.1 NC_005345.2 + 11650 0.74 0.208085
Target:  5'- cGCCGCAgccCGCGCCCGGCGggaACGucguACCGc -3'
miRNA:   3'- cUGGUGUa--GUGCGGGCCGU---UGC----UGGU- -5'
26371 5' -57.1 NC_005345.2 + 16351 0.73 0.223451
Target:  5'- cGGCgGCAUCGCGgCCGGCGccgcggugaucgcgACGAUCGg -3'
miRNA:   3'- -CUGgUGUAGUGCgGGCCGU--------------UGCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 29802 0.72 0.249905
Target:  5'- cGACUACGcgcUCGCccccggcgagcaGCCCGGCAucgucGCGGCCAc -3'
miRNA:   3'- -CUGGUGU---AGUG------------CGGGCCGU-----UGCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 33106 0.71 0.283855
Target:  5'- -cCCGgAUCGCGCUCGGCGacaACGACgGg -3'
miRNA:   3'- cuGGUgUAGUGCGGGCCGU---UGCUGgU- -5'
26371 5' -57.1 NC_005345.2 + 14362 0.72 0.256416
Target:  5'- gGACCGCGacccggCGCaGCUCGGCGAcCGGCCGg -3'
miRNA:   3'- -CUGGUGUa-----GUG-CGGGCCGUU-GCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 6619 0.72 0.249905
Target:  5'- cGGCgGCgGUUGCGCCCGGCGguGCGACg- -3'
miRNA:   3'- -CUGgUG-UAGUGCGGGCCGU--UGCUGgu -5'
26371 5' -57.1 NC_005345.2 + 24522 0.8 0.078742
Target:  5'- cACCGCGagGCGCCCGGCGAC-ACCGa -3'
miRNA:   3'- cUGGUGUagUGCGGGCCGUUGcUGGU- -5'
26371 5' -57.1 NC_005345.2 + 4265 0.72 0.263066
Target:  5'- aGGCCACGUUgcuGCGCCUcGCGacGCGGCCGc -3'
miRNA:   3'- -CUGGUGUAG---UGCGGGcCGU--UGCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 6358 0.76 0.138475
Target:  5'- uGGCCGCAUC-CGCaCCGGCuacaguCGGCCGa -3'
miRNA:   3'- -CUGGUGUAGuGCG-GGCCGuu----GCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 41338 0.73 0.24353
Target:  5'- cGCCgACGUUcacgGCGUCCGGCGGCGGCgCAg -3'
miRNA:   3'- cUGG-UGUAG----UGCGGGCCGUUGCUG-GU- -5'
26371 5' -57.1 NC_005345.2 + 7454 0.72 0.269855
Target:  5'- gGACCGgAUCGUGaCCgCGGCAGCGAUCGa -3'
miRNA:   3'- -CUGGUgUAGUGC-GG-GCCGUUGCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 20531 0.71 0.291068
Target:  5'- cGGCCuGCGgcgaCACGCCCGGCAugcGCGAUUc -3'
miRNA:   3'- -CUGG-UGUa---GUGCGGGCCGU---UGCUGGu -5'
26371 5' -57.1 NC_005345.2 + 5397 0.76 0.142359
Target:  5'- -uCCAC-UCAgGCCCGGCGGuCGGCCGa -3'
miRNA:   3'- cuGGUGuAGUgCGGGCCGUU-GCUGGU- -5'
26371 5' -57.1 NC_005345.2 + 31618 0.74 0.202629
Target:  5'- gGAUCGCAUgGCgacacgguccucGCCCGGcCGGCGACCGg -3'
miRNA:   3'- -CUGGUGUAgUG------------CGGGCC-GUUGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.