miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26372 3' -68.3 NC_005345.2 + 44798 0.66 0.195754
Target:  5'- gCCCGCCCgCCCgaggCAGGacCCCGGcucGGc -3'
miRNA:   3'- gGGGCGGG-GGGa---GUCCc-GGGCCcu-CC- -5'
26372 3' -68.3 NC_005345.2 + 18064 0.66 0.195754
Target:  5'- aCCCgaGCCgUCCCUCuGGGaCCGGGugcgcGGg -3'
miRNA:   3'- -GGGg-CGG-GGGGAGuCCCgGGCCCu----CC- -5'
26372 3' -68.3 NC_005345.2 + 4195 0.66 0.186381
Target:  5'- gCCaaagCGCCCCCCUCccGcGCCUguuggcguggaaGGGGGGc -3'
miRNA:   3'- -GGg---GCGGGGGGAGucC-CGGG------------CCCUCC- -5'
26372 3' -68.3 NC_005345.2 + 11747 0.66 0.177406
Target:  5'- gCUCGCCgCCUUCGucGGGCUCGGuuuggcGAGGc -3'
miRNA:   3'- gGGGCGGgGGGAGU--CCCGGGCC------CUCC- -5'
26372 3' -68.3 NC_005345.2 + 20978 0.67 0.173064
Target:  5'- aCCCCGagCCCCUCAGGucgaGCaCCGcucccGAGGg -3'
miRNA:   3'- -GGGGCggGGGGAGUCC----CG-GGCc----CUCC- -5'
26372 3' -68.3 NC_005345.2 + 30152 0.67 0.173064
Target:  5'- gCgCCGCCCCgCUCGGgccgaGGCUCGGGc-- -3'
miRNA:   3'- -GgGGCGGGGgGAGUC-----CCGGGCCCucc -5'
26372 3' -68.3 NC_005345.2 + 31802 0.68 0.141623
Target:  5'- gUUCGCCgUCCgggUCGGGGUCCGGGAu- -3'
miRNA:   3'- gGGGCGGgGGG---AGUCCCGGGCCCUcc -5'
26372 3' -68.3 NC_005345.2 + 11588 0.68 0.137733
Target:  5'- gCCUGCgCCCgCCUC-GGGCcgaggugCCGGcGAGGg -3'
miRNA:   3'- gGGGCG-GGG-GGAGuCCCG-------GGCC-CUCC- -5'
26372 3' -68.3 NC_005345.2 + 45263 0.68 0.135997
Target:  5'- gCCCCGCCCUCgccgcgcugcaggcaCUCGGcGUCCGGGuGa -3'
miRNA:   3'- -GGGGCGGGGG---------------GAGUCcCGGGCCCuCc -5'
26372 3' -68.3 NC_005345.2 + 3086 0.68 0.134281
Target:  5'- gCCCCGgCCgccugaucgaCCCUCGGGcCCCGGacauaccGAGGg -3'
miRNA:   3'- -GGGGCgGG----------GGGAGUCCcGGGCC-------CUCC- -5'
26372 3' -68.3 NC_005345.2 + 46765 0.68 0.124718
Target:  5'- aCCCGCgaaCaCCCUU-GGGCCCGcGAGGu -3'
miRNA:   3'- gGGGCGg--G-GGGAGuCCCGGGCcCUCC- -5'
26372 3' -68.3 NC_005345.2 + 2726 0.69 0.121569
Target:  5'- cUCCCGCCCgCCCggcgaugaCAGcGGCCCGcauguGGAGc -3'
miRNA:   3'- -GGGGCGGG-GGGa-------GUC-CCGGGC-----CCUCc -5'
26372 3' -68.3 NC_005345.2 + 27453 0.71 0.084617
Target:  5'- gCCCCGCagcaCCUC-CcGGGCCCugaGGGGGGc -3'
miRNA:   3'- -GGGGCGg---GGGGaGuCCCGGG---CCCUCC- -5'
26372 3' -68.3 NC_005345.2 + 42631 0.72 0.072296
Target:  5'- gCCCCGCCCCgugCCguccGGCCCGGGGu- -3'
miRNA:   3'- -GGGGCGGGG---GGagucCCGGGCCCUcc -5'
26372 3' -68.3 NC_005345.2 + 48839 0.72 0.070417
Target:  5'- gCCCCGCCCCUUcCGGGGggCGGGGcGGu -3'
miRNA:   3'- -GGGGCGGGGGGaGUCCCggGCCCU-CC- -5'
26372 3' -68.3 NC_005345.2 + 25894 0.72 0.065059
Target:  5'- aCUCGCCCCCCUUcucGGCCUGcGAGGc -3'
miRNA:   3'- gGGGCGGGGGGAGuc-CCGGGCcCUCC- -5'
26372 3' -68.3 NC_005345.2 + 28561 0.75 0.037188
Target:  5'- gCCCGCCggCCCCggauuuGGGCCCGGGAa- -3'
miRNA:   3'- gGGGCGG--GGGGagu---CCCGGGCCCUcc -5'
26372 3' -68.3 NC_005345.2 + 30315 0.75 0.036204
Target:  5'- gCCUGCCCCgUUgAccaGGCCCGGGAGGa -3'
miRNA:   3'- gGGGCGGGGgGAgUc--CCGGGCCCUCC- -5'
26372 3' -68.3 NC_005345.2 + 309 0.78 0.021123
Target:  5'- gCCCCGCCCCCCggaAGGGgCgGGGcGGc -3'
miRNA:   3'- -GGGGCGGGGGGag-UCCCgGgCCCuCC- -5'
26372 3' -68.3 NC_005345.2 + 44929 0.82 0.010156
Target:  5'- aCCCCGCCCCCCUuccacgccaaCA-GGCgCGGGAGGg -3'
miRNA:   3'- -GGGGCGGGGGGA----------GUcCCGgGCCCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.