miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26373 3' -54.2 NC_005345.2 + 5287 0.66 0.79679
Target:  5'- gGGUCGGGU--ACUG---CGGggGGCGGg -3'
miRNA:   3'- -CCAGCCCAccUGACuaaGCUa-CCGCC- -5'
26373 3' -54.2 NC_005345.2 + 3079 0.66 0.79679
Target:  5'- uGUCGGcGaGGACacUGGgaaUGAUGGCGGc -3'
miRNA:   3'- cCAGCC-CaCCUG--ACUaa-GCUACCGCC- -5'
26373 3' -54.2 NC_005345.2 + 45473 0.66 0.787048
Target:  5'- cGGcCgGGGUGGGCaUGucggCGAaggUGGUGGg -3'
miRNA:   3'- -CCaG-CCCACCUG-ACuaa-GCU---ACCGCC- -5'
26373 3' -54.2 NC_005345.2 + 27317 0.66 0.787048
Target:  5'- gGGUCGaGUGG-CUGAgaggCGAUcuGCGGa -3'
miRNA:   3'- -CCAGCcCACCuGACUaa--GCUAc-CGCC- -5'
26373 3' -54.2 NC_005345.2 + 10155 0.66 0.777145
Target:  5'- gGGUgGGGaUGGGCgcaGAcgCGAcGGUGGu -3'
miRNA:   3'- -CCAgCCC-ACCUGa--CUaaGCUaCCGCC- -5'
26373 3' -54.2 NC_005345.2 + 31881 0.67 0.72562
Target:  5'- gGGuUCGGGUGcGgUGAgUUCGGggaucGGCGGg -3'
miRNA:   3'- -CC-AGCCCACcUgACU-AAGCUa----CCGCC- -5'
26373 3' -54.2 NC_005345.2 + 16593 0.67 0.72562
Target:  5'- --gCGGGUcaacGGACUGGUgagaGAcgGGCGGc -3'
miRNA:   3'- ccaGCCCA----CCUGACUAag--CUa-CCGCC- -5'
26373 3' -54.2 NC_005345.2 + 17357 0.67 0.714992
Target:  5'- aGGUCGGc-GGACUGGUcgggcucguacUCGGUGccguccGCGGu -3'
miRNA:   3'- -CCAGCCcaCCUGACUA-----------AGCUAC------CGCC- -5'
26373 3' -54.2 NC_005345.2 + 6532 0.68 0.693503
Target:  5'- cGGggCGGGgcgGGGC-GGggCGGUGGgGGa -3'
miRNA:   3'- -CCa-GCCCa--CCUGaCUaaGCUACCgCC- -5'
26373 3' -54.2 NC_005345.2 + 11401 0.7 0.53045
Target:  5'- -uUCGGGUcGACcGAUUCGGUGGuCGa -3'
miRNA:   3'- ccAGCCCAcCUGaCUAAGCUACC-GCc -5'
26373 3' -54.2 NC_005345.2 + 31251 0.71 0.519902
Target:  5'- gGGUCGGGUGcGcACUcgggugcgcgGGUgCGggGGCGGg -3'
miRNA:   3'- -CCAGCCCAC-C-UGA----------CUAaGCuaCCGCC- -5'
26373 3' -54.2 NC_005345.2 + 35846 0.72 0.43898
Target:  5'- cGG-CGGGUGG-CUcGGUUCG--GGCGGg -3'
miRNA:   3'- -CCaGCCCACCuGA-CUAAGCuaCCGCC- -5'
26373 3' -54.2 NC_005345.2 + 35766 0.75 0.308923
Target:  5'- cGG-CGGGgcgGGGCggugGGUUCGGUGGCucGGa -3'
miRNA:   3'- -CCaGCCCa--CCUGa---CUAAGCUACCG--CC- -5'
26373 3' -54.2 NC_005345.2 + 21790 1.12 0.00092
Target:  5'- gGGUCGGGUGGACUGAUUCGAUGGCGGc -3'
miRNA:   3'- -CCAGCCCACCUGACUAAGCUACCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.