miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26373 5' -57.6 NC_005345.2 + 45258 0.66 0.54131
Target:  5'- cGUCCGCcccgcccUCGCCgcgCUgCAGgCACUCg -3'
miRNA:   3'- -CAGGCGucu----AGCGGa--GA-GUCgGUGAG- -5'
26373 5' -57.6 NC_005345.2 + 28983 0.66 0.530601
Target:  5'- -cCUGCAGGUgaaccgcuucCGCCUCgcgCGGUgGCUCc -3'
miRNA:   3'- caGGCGUCUA----------GCGGAGa--GUCGgUGAG- -5'
26373 5' -57.6 NC_005345.2 + 43538 0.66 0.530601
Target:  5'- ---aGCGGAUCGCCgagCUCGucGCCgacaaGCUCg -3'
miRNA:   3'- caggCGUCUAGCGGa--GAGU--CGG-----UGAG- -5'
26373 5' -57.6 NC_005345.2 + 18248 0.66 0.509423
Target:  5'- cGUCaC-CGGGUUGCagaUCagCAGCCACUCg -3'
miRNA:   3'- -CAG-GcGUCUAGCGg--AGa-GUCGGUGAG- -5'
26373 5' -57.6 NC_005345.2 + 43022 0.67 0.487577
Target:  5'- gGUCCGCAGGUucaacagCGCCguaCGGUgCACUCg -3'
miRNA:   3'- -CAGGCGUCUA-------GCGGagaGUCG-GUGAG- -5'
26373 5' -57.6 NC_005345.2 + 42100 0.67 0.478351
Target:  5'- aGUCCGgcCGGGcCGCCUCgaucgcCGGCCGgUCg -3'
miRNA:   3'- -CAGGC--GUCUaGCGGAGa-----GUCGGUgAG- -5'
26373 5' -57.6 NC_005345.2 + 21875 0.67 0.478351
Target:  5'- aUCCGCAGGUCagaGCCUgaUAGCCGu-- -3'
miRNA:   3'- cAGGCGUCUAG---CGGAgaGUCGGUgag -5'
26373 5' -57.6 NC_005345.2 + 29288 0.67 0.478351
Target:  5'- gGUUCG-AGGUCGCC-CgaggCAGCgCGCUCg -3'
miRNA:   3'- -CAGGCgUCUAGCGGaGa---GUCG-GUGAG- -5'
26373 5' -57.6 NC_005345.2 + 16371 0.67 0.468201
Target:  5'- -gCCGCGGcGUCGCCgCUCugcGCCGC-Ca -3'
miRNA:   3'- caGGCGUC-UAGCGGaGAGu--CGGUGaG- -5'
26373 5' -57.6 NC_005345.2 + 45007 0.67 0.458162
Target:  5'- -cCCGCucgacGAgCGCCgCgagCAGCCGCUCg -3'
miRNA:   3'- caGGCGu----CUaGCGGaGa--GUCGGUGAG- -5'
26373 5' -57.6 NC_005345.2 + 32122 0.68 0.400501
Target:  5'- --gCGCGGGugcgagggcgaUCGCCUCggcggCAGCCcGCUCa -3'
miRNA:   3'- cagGCGUCU-----------AGCGGAGa----GUCGG-UGAG- -5'
26373 5' -57.6 NC_005345.2 + 36724 0.68 0.399579
Target:  5'- -cCCGCGcGAcgCGCCUCgacgucaUCGGCCgACUCg -3'
miRNA:   3'- caGGCGU-CUa-GCGGAG-------AGUCGG-UGAG- -5'
26373 5' -57.6 NC_005345.2 + 30916 0.68 0.382333
Target:  5'- -cCCGguGAcgacCGCCgg-CGGCCGCUCa -3'
miRNA:   3'- caGGCguCUa---GCGGagaGUCGGUGAG- -5'
26373 5' -57.6 NC_005345.2 + 24480 0.69 0.35613
Target:  5'- uGUCC-CAGAacUCGCCcgUgAGCCGCUCg -3'
miRNA:   3'- -CAGGcGUCU--AGCGGagAgUCGGUGAG- -5'
26373 5' -57.6 NC_005345.2 + 43389 0.69 0.347681
Target:  5'- -cCUGCGGAcCGCCUCggcgCAGUC-CUCg -3'
miRNA:   3'- caGGCGUCUaGCGGAGa---GUCGGuGAG- -5'
26373 5' -57.6 NC_005345.2 + 11503 0.69 0.339376
Target:  5'- -cCCGCAccGA-CGCCggaCUgCAGCCGCUCa -3'
miRNA:   3'- caGGCGU--CUaGCGGa--GA-GUCGGUGAG- -5'
26373 5' -57.6 NC_005345.2 + 7739 0.7 0.323201
Target:  5'- aUCCGCAGGugacacucgUCGCCgUUCAGCgugUACUCg -3'
miRNA:   3'- cAGGCGUCU---------AGCGGaGAGUCG---GUGAG- -5'
26373 5' -57.6 NC_005345.2 + 40417 0.7 0.312999
Target:  5'- cGUCCGUacGGAUCGCCgCcggcgacggacgagUCGGCCACa- -3'
miRNA:   3'- -CAGGCG--UCUAGCGGaG--------------AGUCGGUGag -5'
26373 5' -57.6 NC_005345.2 + 29830 0.7 0.292596
Target:  5'- -cCCGCAGAUCgGCCacuuUC-CAGCC-CUCg -3'
miRNA:   3'- caGGCGUCUAG-CGG----AGaGUCGGuGAG- -5'
26373 5' -57.6 NC_005345.2 + 21617 0.72 0.220181
Target:  5'- -gCCGCGGGUgaucgccgcgugCGCCUCggugagCAGCUGCUCg -3'
miRNA:   3'- caGGCGUCUA------------GCGGAGa-----GUCGGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.