miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26374 3' -65.8 NC_005345.2 + 41902 0.66 0.25089
Target:  5'- uGUCgGUUCGGCCGcccGGUcCCCGGCAUGa -3'
miRNA:   3'- cCAG-CGGGCCGGC---CCGcGGGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 5512 0.66 0.25089
Target:  5'- gGGUCGCuacuaccgcgacCCcGCCgGGGgGCCCGACcUGa -3'
miRNA:   3'- -CCAGCG------------GGcCGG-CCCgCGGGCUGuGC- -5'
26374 3' -65.8 NC_005345.2 + 8376 0.66 0.25089
Target:  5'- --aCGCCCGcGCCGGccgaccgGCCCGACGa- -3'
miRNA:   3'- ccaGCGGGC-CGGCCcg-----CGGGCUGUgc -5'
26374 3' -65.8 NC_005345.2 + 32284 0.66 0.249095
Target:  5'- --aCGCUCGGCCGuaccGCGCCUGcagcugcgcccgguACACGa -3'
miRNA:   3'- ccaGCGGGCCGGCc---CGCGGGC--------------UGUGC- -5'
26374 3' -65.8 NC_005345.2 + 18316 0.66 0.244947
Target:  5'- cGUCGCaCUGGUC-GGCGUcaCCGGCGCc -3'
miRNA:   3'- cCAGCG-GGCCGGcCCGCG--GGCUGUGc -5'
26374 3' -65.8 NC_005345.2 + 34284 0.66 0.239121
Target:  5'- -cUCGCCuCGGCCGcgucgaGCGCCCGcUGCa -3'
miRNA:   3'- ccAGCGG-GCCGGCc-----CGCGGGCuGUGc -5'
26374 3' -65.8 NC_005345.2 + 26616 0.67 0.233411
Target:  5'- cGG-CGCa-GGCCGGuGUGCCCGAggacUACa -3'
miRNA:   3'- -CCaGCGggCCGGCC-CGCGGGCU----GUGc -5'
26374 3' -65.8 NC_005345.2 + 37502 0.67 0.233411
Target:  5'- --cCGCCgGGCgCGGGC-UgCGGCGCGg -3'
miRNA:   3'- ccaGCGGgCCG-GCCCGcGgGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 43501 0.67 0.233411
Target:  5'- -aUCGCCgccaaGGUCGcGGCGaaCCCGGCGCu -3'
miRNA:   3'- ccAGCGGg----CCGGC-CCGC--GGGCUGUGc -5'
26374 3' -65.8 NC_005345.2 + 30161 0.67 0.233411
Target:  5'- aGGUCGUcccgCCGGCCaGcGGCGaCCC-AUGCGg -3'
miRNA:   3'- -CCAGCG----GGCCGG-C-CCGC-GGGcUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 29417 0.67 0.233411
Target:  5'- cGGUCGCCUcgcgGGCguugCGGGCGUcguccucggcgUCGAgGCGg -3'
miRNA:   3'- -CCAGCGGG----CCG----GCCCGCG-----------GGCUgUGC- -5'
26374 3' -65.8 NC_005345.2 + 11568 0.67 0.233411
Target:  5'- cGGUCGCCCGccugcagcccGCCu-GCGCCCGcCuCGg -3'
miRNA:   3'- -CCAGCGGGC----------CGGccCGCGGGCuGuGC- -5'
26374 3' -65.8 NC_005345.2 + 38843 0.67 0.233411
Target:  5'- --aCGCUCGuGCCGGGCcgcucccacaGCCCG-CGCc -3'
miRNA:   3'- ccaGCGGGC-CGGCCCG----------CGGGCuGUGc -5'
26374 3' -65.8 NC_005345.2 + 23477 0.67 0.227816
Target:  5'- aGUCGCCgcaGGCCGaucacuucGGCucGUCCGACugGc -3'
miRNA:   3'- cCAGCGGg--CCGGC--------CCG--CGGGCUGugC- -5'
26374 3' -65.8 NC_005345.2 + 33097 0.67 0.227816
Target:  5'- --cCGCCCGGacCCGGaucGCGCUCGGCgACa -3'
miRNA:   3'- ccaGCGGGCC--GGCC---CGCGGGCUG-UGc -5'
26374 3' -65.8 NC_005345.2 + 45552 0.67 0.227816
Target:  5'- gGGUCaCCUgugGGCCGacgacccgcaGGUGCgCGACACGg -3'
miRNA:   3'- -CCAGcGGG---CCGGC----------CCGCGgGCUGUGC- -5'
26374 3' -65.8 NC_005345.2 + 6986 0.67 0.227816
Target:  5'- ---aGCugCUGGCCGGGCGC-CGACAgGc -3'
miRNA:   3'- ccagCG--GGCCGGCCCGCGgGCUGUgC- -5'
26374 3' -65.8 NC_005345.2 + 45580 0.67 0.227816
Target:  5'- cGGUUGC--GGCCGGGgGCCgCGA-ACGg -3'
miRNA:   3'- -CCAGCGggCCGGCCCgCGG-GCUgUGC- -5'
26374 3' -65.8 NC_005345.2 + 27129 0.67 0.227816
Target:  5'- cGG-CgGCaCCGGCCGGcGUcgagcuGCCCGAgGCGc -3'
miRNA:   3'- -CCaG-CG-GGCCGGCC-CG------CGGGCUgUGC- -5'
26374 3' -65.8 NC_005345.2 + 8808 0.67 0.222335
Target:  5'- -cUCGCcacgacgagacgCCGGCCGGGCucgucugccgcgGCUgCGGCACGg -3'
miRNA:   3'- ccAGCG------------GGCCGGCCCG------------CGG-GCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.