Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 26374 | 5' | -54.4 | NC_005345.2 | + | 36516 | 0.7 | 0.491367 |
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Target: 5'- cGCCccGGCGaacugGCGUGgGUGGGCGAa- -3' miRNA: 3'- -CGGuaCCGCg----CGCAUgCACUUGCUcu -5' |
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| 26374 | 5' | -54.4 | NC_005345.2 | + | 23774 | 0.7 | 0.491367 |
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Target: 5'- uGCCGUGGCGCGgccCGgaGCaUGAGgGAGAg -3' miRNA: 3'- -CGGUACCGCGC---GCa-UGcACUUgCUCU- -5' |
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| 26374 | 5' | -54.4 | NC_005345.2 | + | 47926 | 0.71 | 0.450768 |
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Target: 5'- aGCCAUGGgacccguacCGCGCG-GCGUGGcccGCGGGc -3' miRNA: 3'- -CGGUACC---------GCGCGCaUGCACU---UGCUCu -5' |
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| 26374 | 5' | -54.4 | NC_005345.2 | + | 40342 | 0.71 | 0.450768 |
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Target: 5'- cGCCGUGGCGgGCGacgggUACGgccguggGGGCGAu- -3' miRNA: 3'- -CGGUACCGCgCGC-----AUGCa------CUUGCUcu -5' |
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| 26374 | 5' | -54.4 | NC_005345.2 | + | 9990 | 0.72 | 0.412081 |
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Target: 5'- cGUCAUGGUGCGacacgGCGccggUGAGCGGGAg -3' miRNA: 3'- -CGGUACCGCGCgca--UGC----ACUUGCUCU- -5' |
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| 26374 | 5' | -54.4 | NC_005345.2 | + | 35004 | 0.74 | 0.309221 |
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Target: 5'- cGCCggGGCGCuGCGgcggccACGUGGggGCGGGAc -3' miRNA: 3'- -CGGuaCCGCG-CGCa-----UGCACU--UGCUCU- -5' |
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| 26374 | 5' | -54.4 | NC_005345.2 | + | 621 | 0.78 | 0.178335 |
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Target: 5'- aCCAUGGUGCggaucGCGUccucggccugcgGCGUGAGCGGGAc -3' miRNA: 3'- cGGUACCGCG-----CGCA------------UGCACUUGCUCU- -5' |
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| 26374 | 5' | -54.4 | NC_005345.2 | + | 22552 | 1.11 | 0.000864 |
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Target: 5'- aGCCAUGGCGCGCGUACGUGAACGAGAc -3' miRNA: 3'- -CGGUACCGCGCGCAUGCACUUGCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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