miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26375 3' -54.8 NC_005345.2 + 3292 0.74 0.311829
Target:  5'- uGCCGUccaCGUCgaGGgCGUCGGCGAGu -3'
miRNA:   3'- -CGGCAa--GCAGgaCCaGCAGCUGCUCu -5'
26375 3' -54.8 NC_005345.2 + 3328 0.67 0.684769
Target:  5'- cGCCGUgcaCGUCaC-GGUCG-CGACGAcGGa -3'
miRNA:   3'- -CGGCAa--GCAG-GaCCAGCaGCUGCU-CU- -5'
26375 3' -54.8 NC_005345.2 + 5939 0.66 0.768657
Target:  5'- cGCCGUggUCGUUCUcaGGgacagCGgCGugGGGAa -3'
miRNA:   3'- -CGGCA--AGCAGGA--CCa----GCaGCugCUCU- -5'
26375 3' -54.8 NC_005345.2 + 8356 0.68 0.60854
Target:  5'- cCCGgUCGUCgUGaGU-GUCGGCGAGGu -3'
miRNA:   3'- cGGCaAGCAGgAC-CAgCAGCUGCUCU- -5'
26375 3' -54.8 NC_005345.2 + 11017 0.68 0.619446
Target:  5'- uGCCGUaCuUCCcGGUCGaUGACGGGGc -3'
miRNA:   3'- -CGGCAaGcAGGaCCAGCaGCUGCUCU- -5'
26375 3' -54.8 NC_005345.2 + 13403 0.71 0.471457
Target:  5'- cGCCgGUUCGUCCUGcGccgcacCGUCGACGucuccGGAg -3'
miRNA:   3'- -CGG-CAAGCAGGAC-Ca-----GCAGCUGC-----UCU- -5'
26375 3' -54.8 NC_005345.2 + 16205 0.66 0.778638
Target:  5'- cGCCGUgcucCGUCa-GGagGUgGGCGAGGc -3'
miRNA:   3'- -CGGCAa---GCAGgaCCagCAgCUGCUCU- -5'
26375 3' -54.8 NC_005345.2 + 17272 0.67 0.703052
Target:  5'- cGCCGcg-GUCCUGGUCugcgcgcgggucuuGUCGGCcGGAc -3'
miRNA:   3'- -CGGCaagCAGGACCAG--------------CAGCUGcUCU- -5'
26375 3' -54.8 NC_005345.2 + 18300 0.66 0.73793
Target:  5'- cGCUGUUCGUCCucgccgucgcacUGGUCGgcgucacCGGCGc-- -3'
miRNA:   3'- -CGGCAAGCAGG------------ACCAGCa------GCUGCucu -5'
26375 3' -54.8 NC_005345.2 + 20829 0.78 0.183534
Target:  5'- cGUCG-UCGUCCUGGUCGUCGucgccgucgcccuugGCGGGc -3'
miRNA:   3'- -CGGCaAGCAGGACCAGCAGC---------------UGCUCu -5'
26375 3' -54.8 NC_005345.2 + 21248 0.76 0.242507
Target:  5'- cGUCG-UCGUCCUGGUCGUCGucCGuGu -3'
miRNA:   3'- -CGGCaAGCAGGACCAGCAGCu-GCuCu -5'
26375 3' -54.8 NC_005345.2 + 21278 0.7 0.533232
Target:  5'- cGCCG-UCGUCCccGUCGUCGGgggcgccgcCGAGGa -3'
miRNA:   3'- -CGGCaAGCAGGacCAGCAGCU---------GCUCU- -5'
26375 3' -54.8 NC_005345.2 + 21389 0.76 0.23633
Target:  5'- cCCGUUCGUCCUGcagCG-CGACGAGu -3'
miRNA:   3'- cGGCAAGCAGGACca-GCaGCUGCUCu -5'
26375 3' -54.8 NC_005345.2 + 21906 0.66 0.727463
Target:  5'- cGCCccUCGcUCCgGG-CGUCGACGAa- -3'
miRNA:   3'- -CGGcaAGC-AGGaCCaGCAGCUGCUcu -5'
26375 3' -54.8 NC_005345.2 + 22879 1.12 0.000851
Target:  5'- cGCCGUUCGUCCUGGUCGUCGACGAGAg -3'
miRNA:   3'- -CGGCAAGCAGGACCAGCAGCUGCUCU- -5'
26375 3' -54.8 NC_005345.2 + 23238 0.67 0.716902
Target:  5'- cGCCGgUC-UCCgGGUCGuacUCGACGAu- -3'
miRNA:   3'- -CGGCaAGcAGGaCCAGC---AGCUGCUcu -5'
26375 3' -54.8 NC_005345.2 + 23303 0.66 0.765636
Target:  5'- gGCCGgccgUUGUCCUcGGUccgcgucgggugcgCGcCGACGAGc -3'
miRNA:   3'- -CGGCa---AGCAGGA-CCA--------------GCaGCUGCUCu -5'
26375 3' -54.8 NC_005345.2 + 24633 0.66 0.73793
Target:  5'- cGCCGggCG-CCUcgcGGUgGUCGACcAGGa -3'
miRNA:   3'- -CGGCaaGCaGGA---CCAgCAGCUGcUCU- -5'
26375 3' -54.8 NC_005345.2 + 29555 0.8 0.130932
Target:  5'- cGUCG-UCGUCCUGGUCGUgaucggucaCGGCGGGGu -3'
miRNA:   3'- -CGGCaAGCAGGACCAGCA---------GCUGCUCU- -5'
26375 3' -54.8 NC_005345.2 + 29961 0.66 0.727463
Target:  5'- gGCCGUcgggcucgUCGUCgaGGggcUCGUCGGCGu-- -3'
miRNA:   3'- -CGGCA--------AGCAGgaCC---AGCAGCUGCucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.