miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26375 3' -54.8 NC_005345.2 + 38573 0.71 0.481513
Target:  5'- cGCuCGUacUCGUCCUcGGUCGgcaucgUGGCGAGc -3'
miRNA:   3'- -CG-GCA--AGCAGGA-CCAGCa-----GCUGCUCu -5'
26375 3' -54.8 NC_005345.2 + 13403 0.71 0.471457
Target:  5'- cGCCgGUUCGUCCUGcGccgcacCGUCGACGucuccGGAg -3'
miRNA:   3'- -CGG-CAAGCAGGAC-Ca-----GCAGCUGC-----UCU- -5'
26375 3' -54.8 NC_005345.2 + 34034 0.71 0.441951
Target:  5'- gGCCGgacCGUCC-GGaUCGaCGGCGAGAu -3'
miRNA:   3'- -CGGCaa-GCAGGaCC-AGCaGCUGCUCU- -5'
26375 3' -54.8 NC_005345.2 + 39318 0.72 0.404295
Target:  5'- -----aCGUCCUGGUCGUCGAgGAc- -3'
miRNA:   3'- cggcaaGCAGGACCAGCAGCUgCUcu -5'
26375 3' -54.8 NC_005345.2 + 44610 0.73 0.368729
Target:  5'- uGCCG-UCGUCCgGGUCGugccccUCGuCGAGGc -3'
miRNA:   3'- -CGGCaAGCAGGaCCAGC------AGCuGCUCU- -5'
26375 3' -54.8 NC_005345.2 + 41909 0.73 0.360179
Target:  5'- cGUCG-UCG-CCUGGUCGUCGcCGAcGAc -3'
miRNA:   3'- -CGGCaAGCaGGACCAGCAGCuGCU-CU- -5'
26375 3' -54.8 NC_005345.2 + 3292 0.74 0.311829
Target:  5'- uGCCGUccaCGUCgaGGgCGUCGGCGAGu -3'
miRNA:   3'- -CGGCAa--GCAGgaCCaGCAGCUGCUCu -5'
26375 3' -54.8 NC_005345.2 + 34963 0.75 0.275429
Target:  5'- cUCGgcggCGUCCUGGUCGUCGAgGGc- -3'
miRNA:   3'- cGGCaa--GCAGGACCAGCAGCUgCUcu -5'
26375 3' -54.8 NC_005345.2 + 21248 0.76 0.242507
Target:  5'- cGUCG-UCGUCCUGGUCGUCGucCGuGu -3'
miRNA:   3'- -CGGCaAGCAGGACCAGCAGCu-GCuCu -5'
26375 3' -54.8 NC_005345.2 + 21389 0.76 0.23633
Target:  5'- cCCGUUCGUCCUGcagCG-CGACGAGu -3'
miRNA:   3'- cGGCAAGCAGGACca-GCaGCUGCUCu -5'
26375 3' -54.8 NC_005345.2 + 20829 0.78 0.183534
Target:  5'- cGUCG-UCGUCCUGGUCGUCGucgccgucgcccuugGCGGGc -3'
miRNA:   3'- -CGGCaAGCAGGACCAGCAGC---------------UGCUCu -5'
26375 3' -54.8 NC_005345.2 + 29555 0.8 0.130932
Target:  5'- cGUCG-UCGUCCUGGUCGUgaucggucaCGGCGGGGu -3'
miRNA:   3'- -CGGCaAGCAGGACCAGCA---------GCUGCUCU- -5'
26375 3' -54.8 NC_005345.2 + 22879 1.12 0.000851
Target:  5'- cGCCGUUCGUCCUGGUCGUCGACGAGAg -3'
miRNA:   3'- -CGGCAAGCAGGACCAGCAGCUGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.