miRNA display CGI


Results 21 - 37 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26375 5' -53.9 NC_005345.2 + 32972 0.69 0.655798
Target:  5'- cCGCGUCcgCGUaguccucggcgcaggCGGCcgGGGugGCGGg -3'
miRNA:   3'- -GCGCAGuaGCA---------------GCCGuaCCUgaUGCC- -5'
26375 5' -53.9 NC_005345.2 + 35905 0.69 0.6514
Target:  5'- gGCGgCAUCGUCGG-GUGG-CU-CGGg -3'
miRNA:   3'- gCGCaGUAGCAGCCgUACCuGAuGCC- -5'
26375 5' -53.9 NC_005345.2 + 18758 0.69 0.629386
Target:  5'- aGCG-CAUgGccggCGGCGUGuACUGCGGa -3'
miRNA:   3'- gCGCaGUAgCa---GCCGUACcUGAUGCC- -5'
26375 5' -53.9 NC_005345.2 + 17348 0.69 0.618378
Target:  5'- aCGuCGUCGagGUCGGC--GGACUGguCGGg -3'
miRNA:   3'- -GC-GCAGUagCAGCCGuaCCUGAU--GCC- -5'
26375 5' -53.9 NC_005345.2 + 9396 0.69 0.607381
Target:  5'- uCGcCGUCGUCGaCGGCGcGuGGCaGCGGg -3'
miRNA:   3'- -GC-GCAGUAGCaGCCGUaC-CUGaUGCC- -5'
26375 5' -53.9 NC_005345.2 + 8127 0.7 0.585462
Target:  5'- cCGcCGUCGUCGaCGGCucuUGGccGCUGCGc -3'
miRNA:   3'- -GC-GCAGUAGCaGCCGu--ACC--UGAUGCc -5'
26375 5' -53.9 NC_005345.2 + 3308 0.7 0.563698
Target:  5'- gGCGUCGgcgagugcuUCGagggUGGCGUcacucGGGCUGCGGg -3'
miRNA:   3'- gCGCAGU---------AGCa---GCCGUA-----CCUGAUGCC- -5'
26375 5' -53.9 NC_005345.2 + 29439 0.71 0.531485
Target:  5'- gGCGUCGUCcUCGGCGUcGAg-GCGGu -3'
miRNA:   3'- gCGCAGUAGcAGCCGUAcCUgaUGCC- -5'
26375 5' -53.9 NC_005345.2 + 37677 0.71 0.510382
Target:  5'- gCGCGgcccugauGUCGUCGGcCGUGGGCcgccaguccUGCGGg -3'
miRNA:   3'- -GCGCag------UAGCAGCC-GUACCUG---------AUGCC- -5'
26375 5' -53.9 NC_005345.2 + 48420 0.71 0.499962
Target:  5'- aGCGgcaCGUCGaCGGCGUGGGCgaucUGGa -3'
miRNA:   3'- gCGCa--GUAGCaGCCGUACCUGau--GCC- -5'
26375 5' -53.9 NC_005345.2 + 43853 0.71 0.489637
Target:  5'- cCG-GUCGacggggCGUCGGCcgGGACUccGCGGc -3'
miRNA:   3'- -GCgCAGUa-----GCAGCCGuaCCUGA--UGCC- -5'
26375 5' -53.9 NC_005345.2 + 634 0.72 0.469294
Target:  5'- uCGCGUCcUCGgccugCGGCGUgagcgGGACcgUGCGGa -3'
miRNA:   3'- -GCGCAGuAGCa----GCCGUA-----CCUG--AUGCC- -5'
26375 5' -53.9 NC_005345.2 + 45347 0.72 0.449392
Target:  5'- -cCGUCGUCGcacCGGUGUGGACcgUGCGGc -3'
miRNA:   3'- gcGCAGUAGCa--GCCGUACCUG--AUGCC- -5'
26375 5' -53.9 NC_005345.2 + 29524 0.73 0.41104
Target:  5'- -aUGUCGUCGUCGGCGUcgaGGuACU-CGGg -3'
miRNA:   3'- gcGCAGUAGCAGCCGUA---CC-UGAuGCC- -5'
26375 5' -53.9 NC_005345.2 + 15326 0.73 0.383644
Target:  5'- --gGUCGgugCGUCGGCcgGGGCguaGCGGg -3'
miRNA:   3'- gcgCAGUa--GCAGCCGuaCCUGa--UGCC- -5'
26375 5' -53.9 NC_005345.2 + 22720 0.74 0.369536
Target:  5'- uGaCGUCAUCGUCGaGcCGUGGACgauccgcgaggacgACGGg -3'
miRNA:   3'- gC-GCAGUAGCAGC-C-GUACCUGa-------------UGCC- -5'
26375 5' -53.9 NC_005345.2 + 22916 1.1 0.00129
Target:  5'- gCGCGUCAUCGUCGGCAUGGACUACGGc -3'
miRNA:   3'- -GCGCAGUAGCAGCCGUACCUGAUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.