miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26376 5' -57.7 NC_005345.2 + 28393 0.66 0.560605
Target:  5'- cGCGCCgccgcgGCGGca-GcGGCAGGCAgGg -3'
miRNA:   3'- aUGCGGa-----CGCCuagCuCCGUCUGUgC- -5'
26376 5' -57.7 NC_005345.2 + 3065 0.66 0.549849
Target:  5'- gACGUa-GCGGAUCGugucGGCgaGGACACu -3'
miRNA:   3'- aUGCGgaCGCCUAGCu---CCG--UCUGUGc -5'
26376 5' -57.7 NC_005345.2 + 11070 0.66 0.549849
Target:  5'- cUGCGCCUGCGuGG-CGcccGGCGG-CGCa -3'
miRNA:   3'- -AUGCGGACGC-CUaGCu--CCGUCuGUGc -5'
26376 5' -57.7 NC_005345.2 + 7043 0.66 0.549849
Target:  5'- --gGCCgGC-GAUCGAGGCGGcccggccggacuACGCGg -3'
miRNA:   3'- augCGGaCGcCUAGCUCCGUC------------UGUGC- -5'
26376 5' -57.7 NC_005345.2 + 14327 0.66 0.539158
Target:  5'- cACGUCgGCGa---GGGGCAGGCGCa -3'
miRNA:   3'- aUGCGGaCGCcuagCUCCGUCUGUGc -5'
26376 5' -57.7 NC_005345.2 + 44643 0.66 0.539158
Target:  5'- aUACGUccucgaccugCUGCGGugggcacggcucGUCGAGcCGGACACGg -3'
miRNA:   3'- -AUGCG----------GACGCC------------UAGCUCcGUCUGUGC- -5'
26376 5' -57.7 NC_005345.2 + 18995 0.66 0.539158
Target:  5'- --gGCCgGCGGGacgaccUCGAcGGguGGCGCGc -3'
miRNA:   3'- augCGGaCGCCU------AGCU-CCguCUGUGC- -5'
26376 5' -57.7 NC_005345.2 + 35557 0.66 0.539158
Target:  5'- -cCGCCgGCGGGUCGA-GCc-ACACGa -3'
miRNA:   3'- auGCGGaCGCCUAGCUcCGucUGUGC- -5'
26376 5' -57.7 NC_005345.2 + 45540 0.66 0.532778
Target:  5'- cUGCGCgaGCaGGGcgacagcggccgaggUCGGGGCGGGC-CGg -3'
miRNA:   3'- -AUGCGgaCG-CCU---------------AGCUCCGUCUGuGC- -5'
26376 5' -57.7 NC_005345.2 + 30372 0.66 0.528539
Target:  5'- gGCaGCCcGCGGcgggcgcagGUCGAGGCGuaccucgacGACGCGu -3'
miRNA:   3'- aUG-CGGaCGCC---------UAGCUCCGU---------CUGUGC- -5'
26376 5' -57.7 NC_005345.2 + 40914 0.66 0.528539
Target:  5'- gGCGaguCCUGCGGGUCGucuacccGGaCAG-CACGg -3'
miRNA:   3'- aUGC---GGACGCCUAGCu------CC-GUCuGUGC- -5'
26376 5' -57.7 NC_005345.2 + 35897 0.66 0.528539
Target:  5'- -uCGCCgacgGCGGcAUCGucggguGGCucgGGACGCGg -3'
miRNA:   3'- auGCGGa---CGCC-UAGCu-----CCG---UCUGUGC- -5'
26376 5' -57.7 NC_005345.2 + 31279 0.66 0.528539
Target:  5'- cUACGCCacgGCGGAcccCGAGGauucccgcCGGGCGCu -3'
miRNA:   3'- -AUGCGGa--CGCCUa--GCUCC--------GUCUGUGc -5'
26376 5' -57.7 NC_005345.2 + 15080 0.66 0.517998
Target:  5'- aGCGCCUGCGuGAUC-AGGCcuAC-CGc -3'
miRNA:   3'- aUGCGGACGC-CUAGcUCCGucUGuGC- -5'
26376 5' -57.7 NC_005345.2 + 37558 0.67 0.497176
Target:  5'- gGCaCCU-CGGccCGAGGCGGGCGCa -3'
miRNA:   3'- aUGcGGAcGCCuaGCUCCGUCUGUGc -5'
26376 5' -57.7 NC_005345.2 + 12493 0.67 0.491003
Target:  5'- cACGCggGCGGAUCGAGGUuuggugcccuuGGcgaacccgcgcagcgGCACGa -3'
miRNA:   3'- aUGCGgaCGCCUAGCUCCG-----------UC---------------UGUGC- -5'
26376 5' -57.7 NC_005345.2 + 23613 0.67 0.486906
Target:  5'- gACGCCgGCGGAcCG-GGCAcGGCuGCGc -3'
miRNA:   3'- aUGCGGaCGCCUaGCuCCGU-CUG-UGC- -5'
26376 5' -57.7 NC_005345.2 + 39754 0.67 0.486906
Target:  5'- cUGCGCCUGCGGc---AGGCuGAacaGCGg -3'
miRNA:   3'- -AUGCGGACGCCuagcUCCGuCUg--UGC- -5'
26376 5' -57.7 NC_005345.2 + 4910 0.67 0.486906
Target:  5'- gACGgCUGCGGcugCGuAGGCGGuugcccACACGg -3'
miRNA:   3'- aUGCgGACGCCua-GC-UCCGUC------UGUGC- -5'
26376 5' -57.7 NC_005345.2 + 4390 0.67 0.484865
Target:  5'- gGCGCCgcaugaGCGcGAUCGAcaaggcccggaaGCAGGCGCGg -3'
miRNA:   3'- aUGCGGa-----CGC-CUAGCUc-----------CGUCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.