miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26376 5' -57.7 NC_005345.2 + 8153 0.67 0.476738
Target:  5'- cUGCGCCcGUGG---GAGGCAGAC-CGu -3'
miRNA:   3'- -AUGCGGaCGCCuagCUCCGUCUGuGC- -5'
26376 5' -57.7 NC_005345.2 + 26999 0.67 0.456726
Target:  5'- --aGCCUGCGG---GAcGCGGACGCGg -3'
miRNA:   3'- augCGGACGCCuagCUcCGUCUGUGC- -5'
26376 5' -57.7 NC_005345.2 + 4149 0.67 0.44689
Target:  5'- gGCGCUcgucgaGCGGGugUCGAcgcGGCAGGCGCu -3'
miRNA:   3'- aUGCGGa-----CGCCU--AGCU---CCGUCUGUGc -5'
26376 5' -57.7 NC_005345.2 + 18015 0.67 0.44689
Target:  5'- -cCGCCUGuCGGAcgccgggCGAGcGCAGgaACGCGg -3'
miRNA:   3'- auGCGGAC-GCCUa------GCUC-CGUC--UGUGC- -5'
26376 5' -57.7 NC_005345.2 + 31770 0.67 0.44689
Target:  5'- gUGCGUCU-CGGGUgCGGGGUcGACGCa -3'
miRNA:   3'- -AUGCGGAcGCCUA-GCUCCGuCUGUGc -5'
26376 5' -57.7 NC_005345.2 + 16171 0.68 0.437174
Target:  5'- -cCGCCUGCGc--CGAGgacuacGCGGACGCGg -3'
miRNA:   3'- auGCGGACGCcuaGCUC------CGUCUGUGC- -5'
26376 5' -57.7 NC_005345.2 + 3892 0.68 0.437174
Target:  5'- aGCGCg-GCGaGggCGGGGCGGACGuCGu -3'
miRNA:   3'- aUGCGgaCGC-CuaGCUCCGUCUGU-GC- -5'
26376 5' -57.7 NC_005345.2 + 37946 0.68 0.435245
Target:  5'- gACGCCgacggugcccgaGCGGAUCGGgauccgguGGCucGACGCGg -3'
miRNA:   3'- aUGCGGa-----------CGCCUAGCU--------CCGu-CUGUGC- -5'
26376 5' -57.7 NC_005345.2 + 14789 0.68 0.427579
Target:  5'- aACGCCccggUGCGcuucgacGUCGAgcGGCGGGCGCGg -3'
miRNA:   3'- aUGCGG----ACGCc------UAGCU--CCGUCUGUGC- -5'
26376 5' -57.7 NC_005345.2 + 22659 0.68 0.427579
Target:  5'- -uCGaCCUGCGGAcggUCG-GGCAGuCGCu -3'
miRNA:   3'- auGC-GGACGCCU---AGCuCCGUCuGUGc -5'
26376 5' -57.7 NC_005345.2 + 31804 0.68 0.418111
Target:  5'- -uCGCCgucCGGGUCGGGGUccgGGAUGCGu -3'
miRNA:   3'- auGCGGac-GCCUAGCUCCG---UCUGUGC- -5'
26376 5' -57.7 NC_005345.2 + 41120 0.68 0.408771
Target:  5'- cACGCCcGCGGuaCGGGGCuccGACugGc -3'
miRNA:   3'- aUGCGGaCGCCuaGCUCCGu--CUGugC- -5'
26376 5' -57.7 NC_005345.2 + 37225 0.68 0.408771
Target:  5'- cACGCUUGCgacugccuucgGGAacUCGAuGGCuGACGCGa -3'
miRNA:   3'- aUGCGGACG-----------CCU--AGCU-CCGuCUGUGC- -5'
26376 5' -57.7 NC_005345.2 + 34418 0.68 0.408771
Target:  5'- gGCGCC-GCGGAcCGgauGGGC-GACGCGc -3'
miRNA:   3'- aUGCGGaCGCCUaGC---UCCGuCUGUGC- -5'
26376 5' -57.7 NC_005345.2 + 6862 0.69 0.381549
Target:  5'- gACGCCcacgacGCGccGGUCGAGGUGGACGgCGg -3'
miRNA:   3'- aUGCGGa-----CGC--CUAGCUCCGUCUGU-GC- -5'
26376 5' -57.7 NC_005345.2 + 26773 0.69 0.381549
Target:  5'- gGCGCgggugcgGCGGAUCGuGGCcGGCGCc -3'
miRNA:   3'- aUGCGga-----CGCCUAGCuCCGuCUGUGc -5'
26376 5' -57.7 NC_005345.2 + 14420 0.69 0.381549
Target:  5'- gACGCCUGCcgggcGAUCGAGGUc-GCGCu -3'
miRNA:   3'- aUGCGGACGc----CUAGCUCCGucUGUGc -5'
26376 5' -57.7 NC_005345.2 + 4633 0.69 0.372747
Target:  5'- aGCuGCUgaacGCGGAUCgGGGGCAGGCGUGa -3'
miRNA:   3'- aUG-CGGa---CGCCUAG-CUCCGUCUGUGC- -5'
26376 5' -57.7 NC_005345.2 + 22271 0.69 0.364085
Target:  5'- gGCGCa-GCGGAucgUCGAGGCGGcCGgGg -3'
miRNA:   3'- aUGCGgaCGCCU---AGCUCCGUCuGUgC- -5'
26376 5' -57.7 NC_005345.2 + 32941 0.69 0.364085
Target:  5'- aGCuGCUUGuCGaGcgCGAGGCGGACGCc -3'
miRNA:   3'- aUG-CGGAC-GC-CuaGCUCCGUCUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.