miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26377 3' -61.4 NC_005345.2 + 41888 0.66 0.395084
Target:  5'- cGGGCGGCGAcgcuuGUCGGuUCggccgCCCGg- -3'
miRNA:   3'- -UCCGCCGCU-----CAGCCcAGaca--GGGCac -5'
26377 3' -61.4 NC_005345.2 + 22807 0.66 0.38638
Target:  5'- cGGCGGgGGG-CGGGUCUGacauggCgCGUc -3'
miRNA:   3'- uCCGCCgCUCaGCCCAGACa-----GgGCAc -5'
26377 3' -61.4 NC_005345.2 + 26704 0.66 0.38638
Target:  5'- gAGGCGGCGuggcauGUCGccgaacGUCcGcCCCGUGa -3'
miRNA:   3'- -UCCGCCGCu-----CAGCc-----CAGaCaGGGCAC- -5'
26377 3' -61.4 NC_005345.2 + 37060 0.66 0.377803
Target:  5'- cGGCGGCGAcGUCGucgaUCUGUCgCUGUc -3'
miRNA:   3'- uCCGCCGCU-CAGCcc--AGACAG-GGCAc -5'
26377 3' -61.4 NC_005345.2 + 43462 0.66 0.361038
Target:  5'- cGGCGGCGAGUucgcggcgcagCGcGGUCggcucgGUCCgGg- -3'
miRNA:   3'- uCCGCCGCUCA-----------GC-CCAGa-----CAGGgCac -5'
26377 3' -61.4 NC_005345.2 + 14672 0.66 0.361038
Target:  5'- cGGGCGGCGucgccgauGcCGGGcCggccGUgCCCGUGg -3'
miRNA:   3'- -UCCGCCGCu-------CaGCCCaGa---CA-GGGCAC- -5'
26377 3' -61.4 NC_005345.2 + 35863 0.67 0.344798
Target:  5'- cGGGCGG-GGGUCGGGggCgucGUCgCCGa- -3'
miRNA:   3'- -UCCGCCgCUCAGCCCa-Ga--CAG-GGCac -5'
26377 3' -61.4 NC_005345.2 + 27852 0.67 0.344798
Target:  5'- cGGGCGGCGucgcucGUCGuacucGUCgagGUCCCGg- -3'
miRNA:   3'- -UCCGCCGCu-----CAGCc----CAGa--CAGGGCac -5'
26377 3' -61.4 NC_005345.2 + 14812 0.67 0.344798
Target:  5'- cGaGCGGCGGGcgCGGGUgUGgucgacgCCCGa- -3'
miRNA:   3'- uC-CGCCGCUCa-GCCCAgACa------GGGCac -5'
26377 3' -61.4 NC_005345.2 + 6548 0.67 0.333746
Target:  5'- gGGGCGGUGGGggacguggcuacgCGGG-CgGaCCCGUGa -3'
miRNA:   3'- -UCCGCCGCUCa------------GCCCaGaCaGGGCAC- -5'
26377 3' -61.4 NC_005345.2 + 37415 0.68 0.27832
Target:  5'- aAGGCGGCGAGcCGaaaccCUGUCCUGa- -3'
miRNA:   3'- -UCCGCCGCUCaGCcca--GACAGGGCac -5'
26377 3' -61.4 NC_005345.2 + 30675 0.69 0.265009
Target:  5'- -cGCGGCGAGcaucuUCGGGUCgcggGaCCCGg- -3'
miRNA:   3'- ucCGCCGCUC-----AGCCCAGa---CaGGGCac -5'
26377 3' -61.4 NC_005345.2 + 34626 0.69 0.258549
Target:  5'- cGuGCGGCG-GUCGGGgcggugcgCUGcUCCCGg- -3'
miRNA:   3'- uC-CGCCGCuCAGCCCa-------GAC-AGGGCac -5'
26377 3' -61.4 NC_005345.2 + 48894 0.69 0.258549
Target:  5'- uGGCGGCGAGgugCGGGcggCgaugGcUCCCGa- -3'
miRNA:   3'- uCCGCCGCUCa--GCCCa--Ga---C-AGGGCac -5'
26377 3' -61.4 NC_005345.2 + 30140 0.71 0.195747
Target:  5'- aGGGCGGCGcgccacccGUCGaGGUC-GUCCCGc- -3'
miRNA:   3'- -UCCGCCGCu-------CAGC-CCAGaCAGGGCac -5'
26377 3' -61.4 NC_005345.2 + 7530 0.73 0.12159
Target:  5'- cGGCGGCG-GUCGuGGUgCUGaUCCCGa- -3'
miRNA:   3'- uCCGCCGCuCAGC-CCA-GAC-AGGGCac -5'
26377 3' -61.4 NC_005345.2 + 23123 1.07 0.000351
Target:  5'- gAGGCGGCGAGUCGGGUCUGUCCCGUGc -3'
miRNA:   3'- -UCCGCCGCUCAGCCCAGACAGGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.