miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26377 5' -53.9 NC_005345.2 + 30497 0.66 0.735896
Target:  5'- -gCGCCGGGUcauggcgaacccGGGCGGG--UACCGGCa -3'
miRNA:   3'- aaGUGGUCUA------------CCUGUCCuaGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 7489 0.66 0.735896
Target:  5'- -gCGCCgAGAagccccucacgcUGGAguGGcUCGCCGACc -3'
miRNA:   3'- aaGUGG-UCU------------ACCUguCCuAGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 27573 0.66 0.713981
Target:  5'- -cCGgCGGccGGGCGccGGAUUACCGGCa -3'
miRNA:   3'- aaGUgGUCuaCCUGU--CCUAGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 12638 0.66 0.702888
Target:  5'- -gCACCGGGccucGGAgCGGGcgCACUGGCu -3'
miRNA:   3'- aaGUGGUCUa---CCU-GUCCuaGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 13034 0.66 0.702888
Target:  5'- -aCugCGGc--GACcGGAUCACCGGCa -3'
miRNA:   3'- aaGugGUCuacCUGuCCUAGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 45952 0.66 0.701775
Target:  5'- aUCGCCGGGUacGACaucccucAGGGcUCGCCGACc -3'
miRNA:   3'- aAGUGGUCUAc-CUG-------UCCU-AGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 28839 0.66 0.68836
Target:  5'- aUCGCC--GUGGACGcGGccgguaagaccgacGUCGCCGGCa -3'
miRNA:   3'- aAGUGGucUACCUGU-CC--------------UAGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 44814 0.67 0.679369
Target:  5'- cUUCGCgAGGUgcucgcgGGugGGGcgCAUCGACg -3'
miRNA:   3'- -AAGUGgUCUA-------CCugUCCuaGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 26020 0.67 0.669219
Target:  5'- -gUACCGGAc--GCGGGAgcgCACCGGCg -3'
miRNA:   3'- aaGUGGUCUaccUGUCCUa--GUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 37036 0.67 0.646567
Target:  5'- -gCACCGGgcGaGcCGGGAUCcgGCCGGCg -3'
miRNA:   3'- aaGUGGUCuaC-CuGUCCUAG--UGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 40051 0.67 0.635214
Target:  5'- aUCACCGcGAcGuGCGGGcgGUCGCCGGCg -3'
miRNA:   3'- aAGUGGU-CUaCcUGUCC--UAGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 27488 0.68 0.623859
Target:  5'- --aACCAGGauccgGGGCA-GAUCAUCGACg -3'
miRNA:   3'- aagUGGUCUa----CCUGUcCUAGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 40238 0.68 0.601181
Target:  5'- -cCGCCGuGAUccuggcgagcggGGACGGGG-CGCCGGCg -3'
miRNA:   3'- aaGUGGU-CUA------------CCUGUCCUaGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 44355 0.69 0.560695
Target:  5'- --uGCCGGG-GGGCGaucgucaccucgaacGGGUCGCCGGCg -3'
miRNA:   3'- aagUGGUCUaCCUGU---------------CCUAGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 31309 0.69 0.556238
Target:  5'- gUCGCCGGGgcccggcggccGGGCGGGAaggggcaCGCCGGCa -3'
miRNA:   3'- aAGUGGUCUa----------CCUGUCCUa------GUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 5613 0.69 0.512317
Target:  5'- -gCGCCGGGcucgUGGccgacGCGGuGAUCGCCGACc -3'
miRNA:   3'- aaGUGGUCU----ACC-----UGUC-CUAGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 10295 0.7 0.484546
Target:  5'- -aCACCGGAcccgagcgggaagcGGGCAgagcGGAUCACCGAUg -3'
miRNA:   3'- aaGUGGUCUa-------------CCUGU----CCUAGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 946 0.7 0.480336
Target:  5'- -cCGCCGGGUuGaACGGGAUaCGCCGGCc -3'
miRNA:   3'- aaGUGGUCUAcC-UGUCCUA-GUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 6854 0.71 0.41952
Target:  5'- cUCGCgGcGAcGGACGGGAagUCGCCGAUg -3'
miRNA:   3'- aAGUGgU-CUaCCUGUCCU--AGUGGCUG- -5'
26377 5' -53.9 NC_005345.2 + 27064 0.72 0.381662
Target:  5'- --gGCgCAGAUGgGGCA-GAUCACCGACg -3'
miRNA:   3'- aagUG-GUCUAC-CUGUcCUAGUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.