miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26379 3' -54.9 NC_005345.2 + 27891 0.67 0.702461
Target:  5'- gGGUUCGACGUacagCUCGGCgACGcGUUcgguGUCg -3'
miRNA:   3'- -CCGAGCUGCAg---GAGCUG-UGC-CAG----UAG- -5'
26379 3' -54.9 NC_005345.2 + 5666 0.67 0.702461
Target:  5'- cGGCgaUCGAgGUCaccugugcgUCGgugaGCGCGGUCGUCu -3'
miRNA:   3'- -CCG--AGCUgCAGg--------AGC----UGUGCCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 43991 0.67 0.702461
Target:  5'- gGGCggCGACGagUCgCUCGuGCACGGU-GUCg -3'
miRNA:   3'- -CCGa-GCUGC--AG-GAGC-UGUGCCAgUAG- -5'
26379 3' -54.9 NC_005345.2 + 23555 0.67 0.702461
Target:  5'- uGCUCGGCGuUCUUCGGCAgcacCGG-CAg- -3'
miRNA:   3'- cCGAGCUGC-AGGAGCUGU----GCCaGUag -5'
26379 3' -54.9 NC_005345.2 + 5555 0.67 0.691663
Target:  5'- aGCgugaCGaACGUCCUCGGCACcGG-CGUg -3'
miRNA:   3'- cCGa---GC-UGCAGGAGCUGUG-CCaGUAg -5'
26379 3' -54.9 NC_005345.2 + 37089 0.67 0.691663
Target:  5'- cGGCgagCGAUGaaCUCGGCGcCGGUC-UCc -3'
miRNA:   3'- -CCGa--GCUGCagGAGCUGU-GCCAGuAG- -5'
26379 3' -54.9 NC_005345.2 + 28913 0.67 0.691663
Target:  5'- aGCUgGAC--UCUCGAUACGGaguUCAUCg -3'
miRNA:   3'- cCGAgCUGcaGGAGCUGUGCC---AGUAG- -5'
26379 3' -54.9 NC_005345.2 + 22826 0.67 0.680808
Target:  5'- cGGCaCGaACGgCUgaUCGACgACGGUCAUCc -3'
miRNA:   3'- -CCGaGC-UGCaGG--AGCUG-UGCCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 22240 0.67 0.680808
Target:  5'- cGCUCGACGUCgaCGGCGaGGUg--- -3'
miRNA:   3'- cCGAGCUGCAGgaGCUGUgCCAguag -5'
26379 3' -54.9 NC_005345.2 + 6831 0.67 0.680808
Target:  5'- uGGCg-GGCGggaUCGACAUGGUCcUCg -3'
miRNA:   3'- -CCGagCUGCaggAGCUGUGCCAGuAG- -5'
26379 3' -54.9 NC_005345.2 + 630 0.67 0.680808
Target:  5'- cGGaUCG-CGUCCUCGGCcuGCGG-CGUg -3'
miRNA:   3'- -CCgAGCuGCAGGAGCUG--UGCCaGUAg -5'
26379 3' -54.9 NC_005345.2 + 31489 0.67 0.669907
Target:  5'- cGGaUCGGCGgccCCgCGaACACGGUCGUg -3'
miRNA:   3'- -CCgAGCUGCa--GGaGC-UGUGCCAGUAg -5'
26379 3' -54.9 NC_005345.2 + 35090 0.67 0.669907
Target:  5'- uGUUCGcgauCGUCgUgGuCGCGGUCGUCg -3'
miRNA:   3'- cCGAGCu---GCAGgAgCuGUGCCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 10340 0.67 0.669907
Target:  5'- --gUCGcCGUCgaCGACgugACGGUCAUCg -3'
miRNA:   3'- ccgAGCuGCAGgaGCUG---UGCCAGUAG- -5'
26379 3' -54.9 NC_005345.2 + 29552 0.67 0.669907
Target:  5'- gGGCgUCGuCGUCCuggUCGugAuCGGUCAc- -3'
miRNA:   3'- -CCG-AGCuGCAGG---AGCugU-GCCAGUag -5'
26379 3' -54.9 NC_005345.2 + 38795 0.67 0.663349
Target:  5'- aGGCUCGuacucgaugaccgucACGUCgUCGACGgcgacgacauCGGUgAUCc -3'
miRNA:   3'- -CCGAGC---------------UGCAGgAGCUGU----------GCCAgUAG- -5'
26379 3' -54.9 NC_005345.2 + 17140 0.67 0.648009
Target:  5'- cGGUcgCGACGUUggUCGGgGCGGUCGUg -3'
miRNA:   3'- -CCGa-GCUGCAGg-AGCUgUGCCAGUAg -5'
26379 3' -54.9 NC_005345.2 + 6662 0.67 0.648009
Target:  5'- gGGCgaacgUGGCGaucUCCUCGACgACGGccucggCGUCg -3'
miRNA:   3'- -CCGa----GCUGC---AGGAGCUG-UGCCa-----GUAG- -5'
26379 3' -54.9 NC_005345.2 + 2017 0.68 0.637034
Target:  5'- aGGCguuccUCGGCGUCCUCGucgaGCGGg---- -3'
miRNA:   3'- -CCG-----AGCUGCAGGAGCug--UGCCaguag -5'
26379 3' -54.9 NC_005345.2 + 38923 0.68 0.637034
Target:  5'- aGCUUGA---CCUCGACGgGGUCGUg -3'
miRNA:   3'- cCGAGCUgcaGGAGCUGUgCCAGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.