Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26379 | 5' | -51.9 | NC_005345.2 | + | 24249 | 1.1 | 0.001962 |
Target: 5'- gGUGAGAUCUCUCCGAUCACGUCGUCGg -3' miRNA: 3'- -CACUCUAGAGAGGCUAGUGCAGCAGC- -5' |
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26379 | 5' | -51.9 | NC_005345.2 | + | 45414 | 0.7 | 0.653245 |
Target: 5'- -cGAG--UUCUUCGAcCGCGUCGUCGa -3' miRNA: 3'- caCUCuaGAGAGGCUaGUGCAGCAGC- -5' |
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26379 | 5' | -51.9 | NC_005345.2 | + | 37717 | 0.66 | 0.869436 |
Target: 5'- -cGGGAUCgcgCUgcggcgcggcgccggCUGGUCgGCGUCGUCGa -3' miRNA: 3'- caCUCUAGa--GA---------------GGCUAG-UGCAGCAGC- -5' |
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26379 | 5' | -51.9 | NC_005345.2 | + | 8670 | 0.67 | 0.849233 |
Target: 5'- -cGGcGAUCUCgCCGAUCGCcucccacggGUUGUCGc -3' miRNA: 3'- caCU-CUAGAGaGGCUAGUG---------CAGCAGC- -5' |
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26379 | 5' | -51.9 | NC_005345.2 | + | 20871 | 0.68 | 0.793048 |
Target: 5'- -cGAGcuuGUCgacgagCUUcgCGAUCGCGUCGUCGu -3' miRNA: 3'- caCUC---UAGa-----GAG--GCUAGUGCAGCAGC- -5' |
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26379 | 5' | -51.9 | NC_005345.2 | + | 920 | 0.69 | 0.708829 |
Target: 5'- -cGcAGAUCga-CCGGcgUCACGUCGUCGa -3' miRNA: 3'- caC-UCUAGagaGGCU--AGUGCAGCAGC- -5' |
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26379 | 5' | -51.9 | NC_005345.2 | + | 39156 | 0.7 | 0.664447 |
Target: 5'- -cGAGG-CUCUUCGcuuUCACGUgGUCGa -3' miRNA: 3'- caCUCUaGAGAGGCu--AGUGCAgCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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