miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2638 3' -60.4 NC_001491.2 + 8782 0.66 0.72416
Target:  5'- uCGCGcaccCUG-CGCagGGCGCUGCUGg -3'
miRNA:   3'- -GCGCuuc-GACgGCGaaCCGCGACGGC- -5'
2638 3' -60.4 NC_001491.2 + 25300 0.66 0.714449
Target:  5'- aGCGAGG-UGCCGUgccGCG-UGCCGg -3'
miRNA:   3'- gCGCUUCgACGGCGaacCGCgACGGC- -5'
2638 3' -60.4 NC_001491.2 + 3181 0.66 0.709568
Target:  5'- cCGCGGAGCcggagaagggcucGCCGCcgGGCgaggacgaugaggGCUGCUGg -3'
miRNA:   3'- -GCGCUUCGa------------CGGCGaaCCG-------------CGACGGC- -5'
2638 3' -60.4 NC_001491.2 + 115312 0.66 0.688907
Target:  5'- gCGCGgcGCgUGCCGCUgagauguaguucauaUacgGGCGCggUGCCa -3'
miRNA:   3'- -GCGCuuCG-ACGGCGA---------------A---CCGCG--ACGGc -5'
2638 3' -60.4 NC_001491.2 + 119207 0.67 0.665055
Target:  5'- cCGCG-AGCUGUgCGCccUGGgGCUGCa- -3'
miRNA:   3'- -GCGCuUCGACG-GCGa-ACCgCGACGgc -5'
2638 3' -60.4 NC_001491.2 + 86345 0.67 0.655067
Target:  5'- gCGUGGAGCUgGuuGC--GGCGCUGUa- -3'
miRNA:   3'- -GCGCUUCGA-CggCGaaCCGCGACGgc -5'
2638 3' -60.4 NC_001491.2 + 2975 0.67 0.645062
Target:  5'- aGCGGGccuuCUGCgGCUgGGCuGCUGCCc -3'
miRNA:   3'- gCGCUUc---GACGgCGAaCCG-CGACGGc -5'
2638 3' -60.4 NC_001491.2 + 35755 0.67 0.625029
Target:  5'- aCGcCGAGGCcgaGCC-CcUGGUGCUGCCc -3'
miRNA:   3'- -GC-GCUUCGa--CGGcGaACCGCGACGGc -5'
2638 3' -60.4 NC_001491.2 + 20442 0.68 0.575159
Target:  5'- cCGCGGuggucGUUGCUGCUgUGGuCGUUGCUGc -3'
miRNA:   3'- -GCGCUu----CGACGGCGA-ACC-GCGACGGC- -5'
2638 3' -60.4 NC_001491.2 + 5743 0.68 0.575159
Target:  5'- gGCGggGUU-CCGCggcgGGCGCUcggacgacgggcGCCGc -3'
miRNA:   3'- gCGCuuCGAcGGCGaa--CCGCGA------------CGGC- -5'
2638 3' -60.4 NC_001491.2 + 10047 0.68 0.565275
Target:  5'- aCGCGGucucGCUGCCGCgcuccgUGGgGgacuUUGCCGc -3'
miRNA:   3'- -GCGCUu---CGACGGCGa-----ACCgC----GACGGC- -5'
2638 3' -60.4 NC_001491.2 + 24626 0.69 0.535917
Target:  5'- gGCGGccGCUGCCGC--GGCgGCgGCCGu -3'
miRNA:   3'- gCGCUu-CGACGGCGaaCCG-CGaCGGC- -5'
2638 3' -60.4 NC_001491.2 + 4449 0.69 0.497652
Target:  5'- -aCGAAGCcGCCGCcggGGCcgaugcugcuGCUGCCGc -3'
miRNA:   3'- gcGCUUCGaCGGCGaa-CCG----------CGACGGC- -5'
2638 3' -60.4 NC_001491.2 + 66461 0.7 0.488275
Target:  5'- cCGCGGAGCUGauaGCUaGGUGUguUGCCc -3'
miRNA:   3'- -GCGCUUCGACgg-CGAaCCGCG--ACGGc -5'
2638 3' -60.4 NC_001491.2 + 137043 0.7 0.451641
Target:  5'- gGCGAGGCgcGCUGUUUGGgagcgcaguccUGUUGCCGg -3'
miRNA:   3'- gCGCUUCGa-CGGCGAACC-----------GCGACGGC- -5'
2638 3' -60.4 NC_001491.2 + 128554 0.7 0.451641
Target:  5'- uGCGggGCcGCgGCacUGGCGCUGgUCGu -3'
miRNA:   3'- gCGCuuCGaCGgCGa-ACCGCGAC-GGC- -5'
2638 3' -60.4 NC_001491.2 + 32382 0.71 0.399658
Target:  5'- cCGaaGAGCUGCCGCUccGGCGCcGCUu -3'
miRNA:   3'- -GCgcUUCGACGGCGAa-CCGCGaCGGc -5'
2638 3' -60.4 NC_001491.2 + 33508 0.72 0.383199
Target:  5'- aCGCaAGGCUGCCGC--GGCcGCgGCCGc -3'
miRNA:   3'- -GCGcUUCGACGGCGaaCCG-CGaCGGC- -5'
2638 3' -60.4 NC_001491.2 + 133944 0.72 0.383199
Target:  5'- gCGCGAuAGCUguaccaggcGCCGagagGGCGUUGCCGu -3'
miRNA:   3'- -GCGCU-UCGA---------CGGCgaa-CCGCGACGGC- -5'
2638 3' -60.4 NC_001491.2 + 35721 0.8 0.116464
Target:  5'- aGCGAGuuCUGCCGggUGGCGCUGCUGg -3'
miRNA:   3'- gCGCUUc-GACGGCgaACCGCGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.